Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20sp._20_27boulardii_27_20[genbank_20GCA_5F001625055.1 _202016-03-30] 324 sequences; 11,569,483 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq244 598 1e-168 seq298 226 9e-57 seq11 141 3e-31 seq224 125 2e-26 >seq244 Length=429 Score = 598 bits (662), Expect = 1e-168 Identities = 397/434 (91%), Gaps = 9/434 (2%) Strand=Plus/Minus Query 22 AGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATGGTTTAACAGATGTGC 81 |||||||||||||||||||| ||||||||||||| ||||||||| ||||||||||||||| Sbjct 429 AGATTTCTGTTCTCCATGAGCCCCCCTTAGGACATCTGCGTTATCGTTTAACAGATGTGC 370 Query 82 CGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATCGGCCCGCGAA--GGA 139 |||||||||||||||||||||||||||||||| |||||||||||| |||| |||| ||| Sbjct 369 CGCCCCAGCCAAACTCCCCACCTGACAATGTCTTCAACCCGGATCAGCCC-CGAATGGGA 311 Query 140 CCTT-AACGCCAGAAAATGGTCGGTGAAGACCAGTTCCGCTTCATTGATTAAGTaaaaaa 198 |||| || || |||| ||| |||| |||| ||||||||||||| |||||||| || Sbjct 310 CCTTGAATGCTAGAACGTGGAAAATGAATTCCAGCTCCGCTTCATTGAATAAGTAAAGAA 251 Query 199 aCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCACTTATTCTACACCTCT 258 || |||| ||||||||||||||||| |||||||| |||||||||||||||||||| || Sbjct 250 ACTATAAAGGTAGTGGTATTTCACTGGCGCCGAA---GCTCCCACTTATTCTACACC-CT 195 Query 259 CAA-GTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTG 317 | | ||| ||||||| ||| |||||||||||||||||||||||||||||||||||||| Sbjct 194 CTATGTCTCTTCACAATGTCAAACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTG 135 Query 318 ATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGG 377 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 134 ATTCTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGG 75 Query 378 AATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTA 437 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 74 AATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTA 15 Query 438 AGAGAGTCATAGTT 451 |||||||||||||| Sbjct 14 AGAGAGTCATAGTT 1 >seq298 Length=5790 Score = 226 bits (250), Expect = 9e-57 Identities = 125/125 (100%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 419 GAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTT 478 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 GAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTT 60 Query 479 GAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATCACT 538 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 GAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATCACT 120 Query 539 TTCTG 543 ||||| Sbjct 121 TTCTG 125 >seq11 Length=1020 Score = 141 bits (156), Expect = 3e-31 Identities = 86/91 (95%), Gaps = 0/91 (0%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||| ||||| |||||||||||||||||||||| ||||||||||||| ||||||||| Sbjct 91 CTTTTGTTCTACTGGAGATTTCTGTTCTCCATGAGCCCCCCTTAGGACATCTGCGTTATC 32 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTC 97 ||||||||||||||||||||||||||||||| Sbjct 31 GTTTAACAGATGTGCCGCCCCAGCCAAACTC 1 >seq224 Length=185940 Score = 125 bits (138), Expect = 2e-26 Identities = 75/79 (95%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 22 AGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATGGTTTAACAGATGTGC 81 |||||||||||||||||||| ||||||||||||| ||||||||| ||||||||||||||| Sbjct 1 AGATTTCTGTTCTCCATGAGCCCCCCTTAGGACATCTGCGTTATCGTTTAACAGATGTGC 60 Query 82 CGCCCCAGCCAAACTCCCC 100 |||||||||||||||| || Sbjct 61 CGCCCCAGCCAAACTCTCC 79 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1635194701952