Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomycopsis_20malanga_20[genbank_20GCA_5F001599215.1_202016-03- 01] 44 sequences; 16,719,687 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq1 266 1e-68 seq6 167 7e-39 seq13 114 4e-23 seq5 111 5e-22 >seq1 Length=3127730 Score = 266 bits (294), Expect = 1e-68 Identities = 179/197 (91%), Gaps = 3/197 (2%) Strand=Plus/Plus Query 310 AATAAATACACCCCTTCC-GAAGTCGGGGTTTTTAGCATGTATTAGCTCTAGAATTACCA 368 ||||| |||| ||||||| ||||||||| |||||||||||||||||||||||||||||| Sbjct 1292356 AATAAGTACATCCCTTCCAGAAGTCGGGAYTTTTAGCATGTATTAGCTCTAGAATTACCA 1292415 Query 369 CGGTTATCCATGTAGTAA-GGTACTATCAAATAAACGATAACTGATTTAATGAGCCATTC 427 |||||||||| ||||||| || |||||||||| || || |||||||| ||||| |||||| Sbjct 1292416 CGGTTATCCAAGTAGTAAAGGCACTATCAAATGAATGAAAACTGATTCAATGAACCATTC 1292475 Query 428 GCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTTTGAGACAAG 487 |||||||||||||| |||||||||||||||||||| |||||||| ||||||||||||| Sbjct 1292476 AGAGTTTCACTGTATA-ATTGCTTATACTTAGACATGTATGGCTTAGTCTTTGAGACAAG 1292534 Query 488 CATATGACTACTGGCAG 504 ||||||||||||||||| Sbjct 1292535 CATATGACTACTGGCAG 1292551 Score = 84.2 bits (92), Expect = 7e-14 Identities = 48/49 (98%), Gaps = 0/49 (0%) Strand=Plus/Plus Query 456 TTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 |||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 1727610 TTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTAATGGCAG 1727658 >seq6 Length=1504906 Score = 167 bits (184), Expect = 7e-39 Identities = 162/203 (80%), Gaps = 9/203 (4%) Strand=Plus/Plus Query 304 TTATCTAATAAATACACCCCTTCC-GAAGTCGGGGTTTTTAGCATGTATTAGCTCTAGAA 362 |||| | ||||||||| ||| || |||||| || | ||||||||||||| ||||||||| Sbjct 1281232 TTATTTTATAAATACATCCCGCCCAGAAGTCCGGATCTTTAGCATGTATTGGCTCTAGAA 1281291 Query 363 TTACCACGGTTATCCATGTAGT-AAGGTACTATCAAATAAACGATAACTGATTTAATGAG 421 ||||| || || |||| ||||| ||||||||| || |||||||| | || || ||||| | Sbjct 1281292 TTACCGCGCTTCTCCAAGTAGTAAAGGTACTAGCATATAAACGAAACCTAATATAATGCG 1281351 Query 422 CCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTTTGA 481 | || ||||| | |||| ||||||| |||||||||| | |||||||| ||||||| Sbjct 1281352 CTATCTGCAGTCT-----TATA-ATTGCTTTTACTTAGACACGTATGGCTTACTCTTTGA 1281405 Query 482 GACAAGCATATGACTACTGGCAG 504 | |||||||| || ||||| || Sbjct 1281406 -ATAAGCATATAACCACTGGTAG 1281427 >seq13 Length=258851 Score = 114 bits (126), Expect = 4e-23 Identities = 91/107 (85%), Gaps = 2/107 (2%) Strand=Plus/Minus Query 304 TTATCTAATAAATACACCCCTTCC-GAAGTCGGGGTTTTTAGCATGTATTAGCTCTAGAA 362 |||||||||||||||| ||| ||| |||||| | ||||| | ||||||| ||||||||| Sbjct 37278 TTATCTAATAAATACATCCCCTCCAGAAGTCAAGATTTTTGGAATGTATTGGCTCTAGAA 37219 Query 363 TTACCACGGTTATCCATGTAGT-AAGGTACTATCAAATAAACGATAA 408 ||||| ||||||||| ||||| |||||||||| | |||||||| || Sbjct 37218 TTACCGTGGTTATCCAAGTAGTAAAGGTACTATAATATAAACGAAAA 37172 >seq5 Length=1624186 Score = 111 bits (122), Expect = 5e-22 Identities = 124/162 (77%), Gaps = 3/162 (2%) Strand=Plus/Plus Query 253 ATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAGGGCGTTGGTTTTTTATCTAAT 312 ||||| |||||||||||||||| ||| || | || ||| || || ||||||||||| | Sbjct 204068 ATTCGAAAAGTTATTATGAATCATCAAAGACCGCC-AAGTGCATTAATTTTTTATCTAGT 204126 Query 313 AAATACACCCCTTCCGAAGTCGGGGTTTT-TAGCATGTATTAGCTCTAGAATTACCACGG 371 ||||||| | || | | || | ||| |||||||||| ||||||| | |||||| | Sbjct 204127 AAATACATTCTTTTCAAGATCCAGAATTTCTAGCATGTATAAGCTCTACACTTACCATGA 204186 Query 372 TTATCCATGTAGTAA-GGTACTATCAAATAAACGATAACTGA 412 |||| || || || || || |||||||||||||||| ||| Sbjct 204187 TTATTCAACAAGCAAAGGAACCATCAAATAAACGATAATTGA 204228 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510399335424