Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Saccharomycopsis_20malanga_20[genbank_20GCA_5F001599215.1_202016-03-
01] 44 sequences; 16,719,687 total letters
Query= AAMG01002244.1
Length=504
Score E
Sequences producing significant alignments: (Bits) Value
seq1 266 1e-68
seq6 167 7e-39
seq13 114 4e-23
seq5 111 5e-22
>seq1
Length=3127730
Score = 266 bits (294), Expect = 1e-68
Identities = 179/197 (91%), Gaps = 3/197 (2%)
Strand=Plus/Plus
Query 310 AATAAATACACCCCTTCC-GAAGTCGGGGTTTTTAGCATGTATTAGCTCTAGAATTACCA 368
||||| |||| ||||||| ||||||||| ||||||||||||||||||||||||||||||
Sbjct 1292356 AATAAGTACATCCCTTCCAGAAGTCGGGAYTTTTAGCATGTATTAGCTCTAGAATTACCA 1292415
Query 369 CGGTTATCCATGTAGTAA-GGTACTATCAAATAAACGATAACTGATTTAATGAGCCATTC 427
|||||||||| ||||||| || |||||||||| || || |||||||| ||||| ||||||
Sbjct 1292416 CGGTTATCCAAGTAGTAAAGGCACTATCAAATGAATGAAAACTGATTCAATGAACCATTC 1292475
Query 428 GCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTTTGAGACAAG 487
|||||||||||||| |||||||||||||||||||| |||||||| |||||||||||||
Sbjct 1292476 AGAGTTTCACTGTATA-ATTGCTTATACTTAGACATGTATGGCTTAGTCTTTGAGACAAG 1292534
Query 488 CATATGACTACTGGCAG 504
|||||||||||||||||
Sbjct 1292535 CATATGACTACTGGCAG 1292551
Score = 84.2 bits (92), Expect = 7e-14
Identities = 48/49 (98%), Gaps = 0/49 (0%)
Strand=Plus/Plus
Query 456 TTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504
|||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1727610 TTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTAATGGCAG 1727658
>seq6
Length=1504906
Score = 167 bits (184), Expect = 7e-39
Identities = 162/203 (80%), Gaps = 9/203 (4%)
Strand=Plus/Plus
Query 304 TTATCTAATAAATACACCCCTTCC-GAAGTCGGGGTTTTTAGCATGTATTAGCTCTAGAA 362
|||| | ||||||||| ||| || |||||| || | ||||||||||||| |||||||||
Sbjct 1281232 TTATTTTATAAATACATCCCGCCCAGAAGTCCGGATCTTTAGCATGTATTGGCTCTAGAA 1281291
Query 363 TTACCACGGTTATCCATGTAGT-AAGGTACTATCAAATAAACGATAACTGATTTAATGAG 421
||||| || || |||| ||||| ||||||||| || |||||||| | || || ||||| |
Sbjct 1281292 TTACCGCGCTTCTCCAAGTAGTAAAGGTACTAGCATATAAACGAAACCTAATATAATGCG 1281351
Query 422 CCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTTTGA 481
| || ||||| | |||| ||||||| |||||||||| | |||||||| |||||||
Sbjct 1281352 CTATCTGCAGTCT-----TATA-ATTGCTTTTACTTAGACACGTATGGCTTACTCTTTGA 1281405
Query 482 GACAAGCATATGACTACTGGCAG 504
| |||||||| || ||||| ||
Sbjct 1281406 -ATAAGCATATAACCACTGGTAG 1281427
>seq13
Length=258851
Score = 114 bits (126), Expect = 4e-23
Identities = 91/107 (85%), Gaps = 2/107 (2%)
Strand=Plus/Minus
Query 304 TTATCTAATAAATACACCCCTTCC-GAAGTCGGGGTTTTTAGCATGTATTAGCTCTAGAA 362
|||||||||||||||| ||| ||| |||||| | ||||| | ||||||| |||||||||
Sbjct 37278 TTATCTAATAAATACATCCCCTCCAGAAGTCAAGATTTTTGGAATGTATTGGCTCTAGAA 37219
Query 363 TTACCACGGTTATCCATGTAGT-AAGGTACTATCAAATAAACGATAA 408
||||| ||||||||| ||||| |||||||||| | |||||||| ||
Sbjct 37218 TTACCGTGGTTATCCAAGTAGTAAAGGTACTATAATATAAACGAAAA 37172
>seq5
Length=1624186
Score = 111 bits (122), Expect = 5e-22
Identities = 124/162 (77%), Gaps = 3/162 (2%)
Strand=Plus/Plus
Query 253 ATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAGGGCGTTGGTTTTTTATCTAAT 312
||||| |||||||||||||||| ||| || | || ||| || || ||||||||||| |
Sbjct 204068 ATTCGAAAAGTTATTATGAATCATCAAAGACCGCC-AAGTGCATTAATTTTTTATCTAGT 204126
Query 313 AAATACACCCCTTCCGAAGTCGGGGTTTT-TAGCATGTATTAGCTCTAGAATTACCACGG 371
||||||| | || | | || | ||| |||||||||| ||||||| | |||||| |
Sbjct 204127 AAATACATTCTTTTCAAGATCCAGAATTTCTAGCATGTATAAGCTCTACACTTACCATGA 204186
Query 372 TTATCCATGTAGTAA-GGTACTATCAAATAAACGATAACTGA 412
|||| || || || || || |||||||||||||||| |||
Sbjct 204187 TTATTCAACAAGCAAAGGAACCATCAAATAAACGATAATTGA 204228
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1510399335424
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |