Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spathaspora_20girioi_20[genbank_20GCA_5F001657455.1_202016-06-03] 2,380 sequences; 14,809,507 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq1916 801 0.0 seq1894 801 0.0 seq340 262 1e-67 >seq1916 Length=1024 Score = 801 bits (888), Expect = 0.0 Identities = 503/539 (93%), Gaps = 6/539 (1%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 215 CTTTTGTTCTACTGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATC 274 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 275 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCTTCAACCCGGATC 334 Query 127 GGCCCGCGAAGG--ACCTTAACGCCAGAAAATGGTCGGTGAAGACCAGTTCCGCTTCATT 184 ||| || || | ||||||| || |||| ||| || ||||| |||| ||||||||||| Sbjct 335 AGCC-GCTAACGCGACCTTAATGCTAGAACGTGGACGATGAAGTCCAGCTCCGCTTCATT 393 Query 185 GATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCACT 244 || ||||||||||||| ||| |||||||||||||||| |||||||| ||||||||| Sbjct 394 GAATAAGTAAAAAAACTATAGAGGTAGTGGTATTTCACCGGCGCCGAA---GCTCCCACT 450 Query 245 TATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCT 304 ||||||||||| || ||| |||||||| ||| ||||||||||||||||||||||||| Sbjct 451 TATTCTACACCCTCCATGTCTTTTCACAATGTCAAACTAGAGTCAAGCTCAACAGGGTCT 510 Query 305 TCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGA 364 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 511 TCTTTCCCCGCTGATTCTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGA 570 Query 365 TAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCA 424 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 571 TAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCA 630 Query 425 TTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTT 484 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 631 TTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTT 690 Query 485 CTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATCACTTTCTG 543 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 691 CTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATCACTTTCTG 749 >seq1894 Length=1064 Score = 801 bits (888), Expect = 0.0 Identities = 503/539 (93%), Gaps = 6/539 (1%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 215 CTTTTGTTCTACTGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATC 274 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 275 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCTTCAACCCGGATC 334 Query 127 GGCCCGCGAAGG--ACCTTAACGCCAGAAAATGGTCGGTGAAGACCAGTTCCGCTTCATT 184 ||| || || | ||||||| || |||| ||| || ||||| |||| ||||||||||| Sbjct 335 AGCC-GCTAACGCGACCTTAATGCTAGAACGTGGACGATGAAGTCCAGCTCCGCTTCATT 393 Query 185 GATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCACT 244 || ||||||||||||| ||| |||||||||||||||| |||||||| ||||||||| Sbjct 394 GAATAAGTAAAAAAACTATAGAGGTAGTGGTATTTCACCGGCGCCGAA---GCTCCCACT 450 Query 245 TATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCT 304 ||||||||||| || ||| |||||||| ||| ||||||||||||||||||||||||| Sbjct 451 TATTCTACACCCTCCATGTCTTTTCACAATGTCAAACTAGAGTCAAGCTCAACAGGGTCT 510 Query 305 TCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGA 364 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 511 TCTTTCCCCGCTGATTCTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGA 570 Query 365 TAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCA 424 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 571 TAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCA 630 Query 425 TTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTT 484 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 631 TTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTT 690 Query 485 CTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATCACTTTCTG 543 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 691 CTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATCACTTTCTG 749 >seq340 Length=415 Score = 262 bits (290), Expect = 1e-67 Identities = 177/196 (90%), Gaps = 3/196 (2%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 201 CTTTTGTTCTACTGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATC 142 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 141 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCTTCAACCCGGATC 82 Query 127 GGCCCGCGAA--GGACCTTAACGCCAGAAAATGGTCGGTGAAGACCAGTTCCGCTTCATT 184 | |||| || |||||||| || |||| ||| || ||||| |||| ||||||||||| Sbjct 81 AG-CCGCTAACGCGACCTTAATGCTAGAACGTGGACGATGAAGTCCAGCTCCGCTTCATT 23 Query 185 GATTAAGTaaaaaaaC 200 || ||||||||||||| Sbjct 22 GAATAAGTAAAAAAAC 7 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1635161082240