Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spathaspora_20hagerdaliae_20[genbank_20GCA_5F001655755.1_202016-06- 03] 1,873 sequences; 16,614,112 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq1180 116 3e-21 seq1308 98.7 8e-16 >seq1180 Length=50914 Score = 116 bits (128), Expect = 3e-21 Identities = 222/327 (68%), Gaps = 0/327 (0%) Strand=Plus/Minus Query 66310 CGACCAATCACCATCCTGTTCTACACGACGCATAAATAGATCAGGTATCCAGAGGGCGTA 66369 |||||| || | || | || || || | ||| |||| |||||| | ||| | | || Sbjct 27901 CGACCAGTCCGCGTCTTCTTTCACTCGCCTCATGAATAAATCAGGCACCCATAATCCATA 27842 Query 66370 GAAGAGATCGCGTGCTCGTTGCTCCTCAATGCCGTGATTTTTGCGCAAGTCGAGGAACTC 66429 ||| | ||| | | || |||||| ||| | || |||||||| | || || | | || Sbjct 27841 GAATAAATCCCTAGTTCTTTGCTCTTCATTACCATGATTTTTTCTCATATCTAAAATATC 27782 Query 66430 AAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATACGTTTGCCGCC 66489 |||||| ||| ||||||| || || | || || ||||| | ||| ||||| || || Sbjct 27781 AAAGATATCGCCATGCCAAGGCTCTATATATATAGCGAATGCCCCCGGCCGTTTACCACC 27722 Query 66490 ACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGCAACATCGGTACGAGCCCGTT 66549 |||||| || || || | || ||||| || || || | ||| || || | ||| Sbjct 27721 ACCTTGATCTACATATCTTGCAGTGTTGTTAAACACGCGGAGCATTGGAACCAATCCGGA 27662 Query 66550 AGATTTGCCATTGGTGCCGTCGATGGGGGATCCTCGTGCCCGTATATCGTGAACATTCAG 66609 ||| || || || |||| ||||| || || | | || ||||| ||||||| | Sbjct 27661 AGACTTTCCGTTTGTGCTTGCGATGAATGACCCACTGGAACGAATATCATGAACATGAAC 27602 Query 66610 ACCAATACCACCGGCCGTCTTCGAGAT 66636 |||||||||||||| | ||||| || Sbjct 27601 ACCAATACCACCGGAGGCTTTCGAAAT 27575 >seq1308 Length=6085 Score = 98.7 bits (108), Expect = 8e-16 Identities = 347/542 (64%), Gaps = 0/542 (0%) Strand=Plus/Plus Query 66095 CCCAAATTCTGTTGATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTG 66154 || ||||||| |||||| |||| ||| || ||||| || || | ||| | ||||| Sbjct 4389 CCTAAATTCTTTTGATTGGTCTTTTCATTACAAGCATCTTTATATAACATAAATGGAGTA 4448 Query 66155 CCGGTCTCAACTTGGGACTCAATGATGGCGTGCCAAAGAGCGCGTGCCTTCACCGTACGT 66214 || || ||| ||||| || | |||| | ||| | ||||||| | || || Sbjct 4449 CCAGTTTCAGTTTGGGCTTCTAAAATGGAATACCATAATTTTTGTGCCTTAATAGTTTGT 4508 Query 66215 ACCGCCCTACCTTTGCGTTCGTAATGTTCGTAGAGGTGTTCGAAGGATTCACCCCATACT 66274 | | ||||| ||||| || | ||| || | ||||| || |||||| | || Sbjct 4509 CTACCACGACCTTCACGTTCATATTTTTCATATAATTGTTCAAATTCTTCACCATAAACA 4568 Query 66275 TCGGACAGACATGGACACTTGTGTGGACACATCAGCGACCAATCACCATCCTGTTCTACA 66334 || | | | ||| | | || | | | | ||||||||||| ||||| ||| Sbjct 4569 TCAGGTAATCCAGGAGCTTCATTAGGGGAAAATAATGTCCAATCACCATTTTGTTCCACA 4628 Query 66335 CGACGCATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCC 66394 || |||||||| |||||| ||||| | || ||| | ||| | |||| || Sbjct 4629 CGCTTCATAAATAAATCAGGAATCCATAATGCTGGGAATAAATCTCTGGCTCTAATTTCT 4688 Query 66395 TCAATGCCGTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCC 66454 || | || |||||||| | | || | || ||||| || || | |||||||||||| Sbjct 4689 TCTTTACCTTGATTTTTTCTAATATCAATAAAATCAAAAATATCTGAATGCCATGGTTCT 4748 Query 66455 AGGTAGATGGCGAACGAGCCCATACGTTTGCCGCCACCTTGGTCGACGTAGCGAGCGACA 66514 | |||| ||| || | || | || |||||||| ||||| || || ||| Sbjct 4749 AAATAGAGGGCAAAAGCACCTGGTCTCTTATTACCACCTTGATCGACATAACGTGCGGTG 4808 Query 66515 TTGTTGAAGACACGCAACATCGGTACGAGCCCGTTAGATTTGCCATTGGTGCCGTCGATG 66574 |||||||| ||||| | ||| || | | ||||| || | ||||| || || | || Sbjct 4809 TTGTTGAAAACACGTACCATGGGGATAATACCGTTGGAAGTACCATTAGTACCAGCAATA 4868 Query 66575 GGGGATCCTCGTGCCCGTATATCGTGAACATTCAGACCAATACCACCGGCCGTCTTCGAG 66634 | || | || |||| |||| || | |||||||||||| || |||| || Sbjct 4869 TAAGCCCCAGTAGAACGAATATTATGAATATGTAAACCAATACCACCAGCACTCTTTGAA 4928 Query 66635 AT 66636 || Sbjct 4929 AT 4930 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397558924640720