Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spathaspora_20xylofermentans_20[genbank_20GCA_5F002105455.1_202017- 04-24] 296 sequences; 15,098,268 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq46 163 2e-35 >seq46 Length=215403 Score = 163 bits (180), Expect = 2e-35 Identities = 567/881 (64%), Gaps = 18/881 (2%) Strand=Plus/Minus Query 61042 GAGAATCCTCGTCGTTTCGTATTGTTCCCCATCGAGTATGAGGATATTTGGCGCATGTAC 61101 ||||| ||||||||||| || ||||||| || | | || ||||||| | ||| Sbjct 150031 GAGAACCCTCGTCGTTTTGTCATGTTCCCAATTAGATTCCATGAAATTTGGCAATTTTAC 149972 Query 61102 AAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAAT 61161 |||||||| |||||||| |||||||| | || || ||||||| ||||| | || Sbjct 149971 AAAAAGGCTGAAGCTTCTTTCTGGACTGCCGAAGAAATCGATTTAAGTAAAGATTTAAAC 149912 Query 61162 GACTGGGAGCGTTTATCGAGCGGTGAACAACATTTCATTAAACATGTGTTG-------GC 61214 || ||| | || | | || ||| |||| | ||| | | | || Sbjct 149911 GATTGGAGAAATAAATTAAATGACGACGAACGTTTCTT----CATTTCTAGAATCCTTGC 149856 Query 61215 GTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGTTTCGCGCAGGA 61274 ||||||||| ||||| || |||||||| ||||| ||||| | ||| ||| | || Sbjct 149855 GTTCTTTGCTGCTTCAGATGGTATCGTTAATGAAAATTTGGTTGAAAACTTCTCAGCTGA 149796 Query 61275 GGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCA 61334 || ||| | | || || | ||||| || ||||| || ||||| || | || Sbjct 149795 AGTTCAAATTCCAGAAGCCAAGTCCTTCTATGGTTTCCAAATCATGATGGAAAACATTCA 149736 Query 61335 CTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGCGGAACGTGAACG 61394 || || | || || | ||||| || || |||| ||| | |||| || Sbjct 149735 TTCTGAAACTTATTCCCTTTTAATCGACACTTATATCAAGGATCCAAAGGAAGCCGACTA 149676 Query 61395 ATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAA 61454 ||||||||||| || || || || | | ||| || || ||||| | | Sbjct 149675 TTTGTTCAATGCTATTGACCATATTCCATGTATTAGAAAGAAGGCTGACTGGGCTCTTAG 149616 Query 61455 TTGGATCACCAGTACAACG--GCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTC 61512 |||||||| || || | | || ||||| |||| |||| | ||||| || | || Sbjct 149615 ATGGATCAC-AG-ACGATGAAGCCTTATTTGCTGAAAGATTAGTTGCATTCGCTGCTGTT 149558 Query 61513 GAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTT 61572 || ||| | || |||||||| || || || | ||||||||||| ||||| | || | Sbjct 149557 GAAGGTATTTTCTTCAGTGGTTCATTCGCATCCATCTTTTGGTTAAAGAAGAGAGGTTTA 149498 Query 61573 ATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGTGAT 61632 ||||| ||| | || ||| ||| || || || | | || || || | ||| |||| Sbjct 149497 ATGCCTGGTTTAACATTCTCCAACGAATTAATCTGTAGAGATGAAGGTTTACATACTGAT 149438 Query 61633 TTTGCTGTTTTGCTATTCAAACGCTATCTGGTGAATCGTCCGTCGGAGGAGCGTGTGGGT 61692 |||||| ||| ||||| | || ||| ||| | || | | || | | | Sbjct 149437 TTTGCTTGTTTATTATTCTCCC---ATTTGGAAAATAGACCAGCTGCAGAAATTATTGAA 149381 Query 61693 GAGATTGTTCGTGAGGCGGTAACTATCGAACAGGAATTTCTGACTGACGCTTTGCCCGTC 61752 ||||| || |||||| || |||| ||| ||||||| | ||||| || || || || Sbjct 149380 AAGATTATTGTTGAGGCTGTTGCTATTGAAAAGGAATTCTTCACTGATGCCTTACCTGTT 149321 Query 61753 TCACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGACCGT 61812 | | || ||||| ||| |||||| || || ||||||||||||| || | Sbjct 149320 AGTTTGTTAGGTATGAACTGTAAGTTAATGTGTCAATACGTTGAATTTGTTGCTGATAGA 149261 Query 61813 CTGTTGGTCGATTTGGGTATGAAGCGGATCTATAATACGAAAAACCCATTTGATTTCATG 61872 | || || | || |||| ||| | | || ||| | || ||||||||||||||| Sbjct 149260 TTATTAGTAGCATTTGGTAATAAGAAGGTTTACAATGTCACTAATCCATTTGATTTCATG 149201 Query 61873 GACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAA 61913 || | ||||| | | ||| ||||| || || ||||| || Sbjct 149200 GAAAACATTTCATTAGCTGGTAAGACCAACTTCTTCGAAAA 149160 Score = 93.3 bits (102), Expect = 3e-14 Identities = 221/334 (66%), Gaps = 0/334 (0%) Strand=Plus/Plus Query 66313 CCAATCACCATCCTGTTCTACACGACGCATAAATAGATCAGGTATCCAGAGGGCGTAGAA 66372 ||||||||| | ||||| || | ||| |||| ||| || ||||| | || ||| Sbjct 192452 CCAATCACCGTTTTGTTCAACTCTCTTCATGAATAAATCTGGAATCCATAAAGCTGGGAA 192511 Query 66373 GAGATCGCGTGCTCGTTGCTCCTCAATGCCGTGATTTTTGCGCAAGTCGAGGAACTCAAA 66432 | ||| | ||||| || || | || ||||| || | | || | ||| ||||| Sbjct 192512 TAAATCTCTTGCTCTAATTTCTTCTTTACCTTGATTCTTTCTAATATCAATGAAATCAAA 192571 Query 66433 GATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATACGTTTGCCGCCACC 66492 || || |||||||||||||| | || | || || | || | ||| ||||| Sbjct 192572 AATATCAGCATGCCATGGTTCTAAATAAAGAGCAAAAGCACCTGGTCTCTTGTTACCACC 192631 Query 66493 TTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGCAACATCGGTACGAGCCCGTTAGA 66552 ||| || || || ||||| ||||||||||||||| | ||| || | || ||||| || Sbjct 192632 TTGATCAACATAACGAGCAGTATTGTTGAAGACACGGACCATAGGAATGATACCGTTGGA 192691 Query 66553 TTTGCCATTGGTGCCGTCGATGGGGGATCCTCGTGCCCGTATATCGTGAACATTCAGACC 66612 | ||||| || || | || | || || || || | |||| || | ||| Sbjct 192692 AGTACCATTAGTACCAGCAATATAAGCACCAGTGGCACGAATGTTATGAATATGTAAACC 192751 Query 66613 AATACCACCGGCCGTCTTCGAGATGGCAGCACAA 66646 ||||||||| || |||| ||||| ||||||| Sbjct 192752 AATACCACCAGCACTCTTTGAGATTAAAGCACAA 192785 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397566565773440