Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporopachydermia_20quercuum_20[genbank_20GCA_5F001599295.1_202016- 03-01] 15 sequences; 16,411,463 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq11 140 3e-28 seq5 120 2e-22 >seq11 Length=408711 Score = 140 bits (154), Expect = 3e-28 Identities = 229/330 (69%), Gaps = 0/330 (0%) Strand=Plus/Plus Query 66340 CATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAAT 66399 ||||||||| || |||||||| | || |||||||| || || |||| | ||| || | Sbjct 180848 CATAAATAGGTCGGGTATCCATAATGCATAGAAGAGGTCACGAGCTCTTAACTCTTCTTT 180907 Query 66400 GCCGTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTA 66459 || |||||||| | ||||| ||||| || || || || |||||||||||| ||||| Sbjct 180908 ACCATGATTTTTTCTTAAGTCAAGGAATTCGAATATATCATTATGCCATGGTTCAAGGTA 180967 Query 66460 GATGGCGAACGAGCCCATACGTTTGCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTT 66519 || || || | |||| | |||| || ||||| || ||||| | ||| || || Sbjct 180968 TATTGCAAAAGCGCCCGGTCTTTTGTTTCCCCCTTGATCAACGTATCTAGCAGTGTTATT 181027 Query 66520 GAAGACACGCAACATCGGTACGAGCCCGTTAGATTTGCCATTGGTGCCGTCGATGGGGGA 66579 ||| || |||||||| || || | ||| || || | || || || || ||| ||| Sbjct 181028 GAAAACTCGCAACATGGGAACTAACCCATTCGAGGTACCGTTAGTTCCTCTTATGTAGGA 181087 Query 66580 TCCTCGTGCCCGTATATCGTGAACATTCAGACCAATACCACCGGCCGTCTTCGAGATGGC 66639 |||| | | |||| |||||| | | || || ||||| || ||| ||||| Sbjct 181088 ACCTCTAGATCTAATATTATGAACACTTAAGCCTATTCCACCAGCGAACTTGGAGATACT 181147 Query 66640 AGCACAATCGGCCACTGTCCGGAATATGCC 66669 |||||||| |||| |||| | |||| || Sbjct 181148 TGCACAATCTGCCAATGTCTTGTATATTCC 181177 >seq5 Length=1485630 Score = 120 bits (132), Expect = 2e-22 Identities = 519/821 (63%), Gaps = 0/821 (0%) Strand=Plus/Minus Query 66008 GCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACAATTTCG 66067 |||||||| || | || || ||||| | || ||||||| | || || |||||||| Sbjct 766718 GCAAGAGAAGCCAAATTACATACAGCAACTTCATCAGGAGAAGAGTATTCAACAATTTCA 766659 Query 66068 GTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGATTGCAT 66127 ||| | |||||| | ||| || | ||||| |||||| ||| ||| || Sbjct 766658 CAGCATAAATTACTTGATTTGATGACACCAAGATTCTTTTGATTGGACTTCTCATTACAA 766599 Query 66128 GCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGATGGCGTGC 66187 || ||||| || | |||| | || || || ||| ||| | || | || | || | Sbjct 766598 GCGTCCTTATAAAGCATGAATGGGACACCAGTTTCAGTTTGAGCTTCCAAAATAGAGTAC 766539 Query 66188 CAAAGAGCGCGTGCCTTCACCGTACGTACCGCCCTACCTTTGCGTTCGTAATGTTCGTAG 66247 ||||| | || ||||| || | ||| || || |||| ||||| || ||| || Sbjct 766538 CAAAGTTTTTGAGCTTTCACTGTTCTTACAGCTCTTCCTTCACGTTCATATCTTTCATAC 766479 Query 66248 AGGTGTTCGAAGGATTCACCCCATACTTCGGACAGACATGGACACTTGTGTGGACACATC 66307 | ||| || || ||| | || || | || |||| | | || | | Sbjct 766478 AAAGCTTCAAATTCTTTACCGTAACAATCAGATAAACCTGGAGCTTCATTAGGTGAAAAG 766419 Query 66308 AGCGACCAATCACCATCCTGTTCTACACGACGCATAAATAGATCAGGTATCCAGAGGGCG 66367 | ||||||||||| | || || | |||||||| |||| ||||| | ||| Sbjct 766418 AAAGACCAATCACCGCCAGCCTCAACTCTCTTCATAAATAAATCACTAATCCATAAGGCA 766359 Query 66368 TAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCCGTGATTTTTGCGCAAGTCGAGGAAC 66427 || | ||| | |||| || || | |||||||| || | || ||| | ||| Sbjct 766358 ACAAATAAATCTCTGGCTCTGATTTCTTCTTTTCCGTGATTCTTTCTCACGTCAATGAAA 766299 Query 66428 TCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATACGTTTGCCG 66487 |||||||| || | |||||| ||||| | ||| | ||||| | || ||||| Sbjct 766298 TCAAAGATATCAGGATGCCAAGGTTCTAAGTATAAAGCGAAAGCACCAGGGCGTTTATTA 766239 Query 66488 CCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGCAACATCGGTACGAGCCCG 66547 ||||||||||| || || | ||| |||||||| ||||||| ||| || | | || Sbjct 766238 CCACCTTGGTCCACATATCTAGCAGTGTTGTTGAAAACACGCATCATGGGGATAATACCA 766179 Query 66548 TTAGATTTGCCATTGGTGCCGTCGATGGGGGATCCTCGTGCCCGTATATCGTGAACATTC 66607 |||||| | || || || || | || || || || | |||| || | || Sbjct 766178 TTAGATGTTCCGTTAGTACCAGCAATATAAGAACCAGTTGATCTAATATTATGGATATGT 766119 Query 66608 AGACCAATACCACCGGCCGTCTTCGAGATGGCAGCACAATCGGCCACTGTCCGGAATATG 66667 | |||||||||||| || ||||| || || ||||| | || | | ||| Sbjct 766118 AAACCAATACCACCAGCAGTCTTGGAAATCAATGCACATGTTTTAAGAGTATCGTAAATG 766059 Query 66668 CCGTCAATGGAGTCACCCTTGATGGTCAGGAGGTAGCATGAACTAAGTTGGGGTTTGGGT 66727 || ||||| || || |||| |||| | | | | || ||| | ||| |||| ||| Sbjct 766058 CCTTCAATTGAATCTTCCTTCATGGCAACCAAGAAACAAGAAGACATTTGAGGTTGAGGT 765999 Query 66728 GTGGCGGCCGAGAAGAGGGTGGGTGTAGCGTGCGTAAAGTAATGGCGAGACATGTAATTG 66787 || | || || | || |||| || || || || || | |||||| |||| Sbjct 765998 GTACCAGCATTAAACAAAGTAGGTGATGCATGAGTGAAATACTTCAAAGACATCAAATTA 765939 Query 66788 TACGTCTCGATGACAGCATCAATGTTTTCGCCATGAATCCC 66828 || || | ||| ||| |||||||| ||||||||||| || Sbjct 765938 TAAGTTTTGATAACATTATCAATGTCATCGCCATGAATACC 765898 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397567927319600