Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Starmerella_20bombicola_20[genbank_20GCA_5F001599315.1_202016-03-01] 16 sequences; 9,561,028 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq1 277 1e-69 seq3 82.4 6e-11 >seq1 Length=2987201 Score = 277 bits (306), Expect = 1e-69 Identities = 643/962 (67%), Gaps = 12/962 (1%) Strand=Plus/Minus Query 66002 GGAAGGGCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACA 66061 || ||||| | ||| || |||||||| ||||| |||| ||||| | | |||||| ||| Sbjct 1207020 GGGAGGGCTACAGAGGCAAGGTTGCACACAGCAGTCTCCTCAGGGGATGAATACTCAACA 1206961 Query 66062 ATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGA 66121 |||||| |||| ||| || ||||| || | ||||| || || |||||||| Sbjct 1206960 ATTTCGCAACACAAATTGGAGCTCTTGATGGTTCCAAGATTCTTCTGGTTGCTCTTGCGG 1206901 Query 66122 TTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGATG 66181 ||| ||||||||||| | |||| | || | || ||||| || | ||||| || Sbjct 1206900 TTGGCAGCATCCTTGTAGAGCATGAAGGGGTTACCAGTCTCGGTCTGAGCCTCAAGAATA 1206841 Query 66182 GCGTGCCAAAGAGCGCGTGCCTTCACCGTACGTACCGCCCT----ACCTTTGCGTTCGTA 66237 |||| |||||| | ||||| | ||||| || ||||| | | || ||| || Sbjct 1206840 GCGTACCAAAGCTTCTGAGCCTTTATGGTACG-ACGGCCCTTTCCAGCCTT---TTCATA 1206785 Query 66238 ATGTTCGTAGAGGTGTTCGAAGGATTCACCCCATACTTCGGACAGACATGGACACTTGTG 66297 | ||||| || || || || || | || || | || | || || | || Sbjct 1206784 CTTCTCGTAAAGAGCCTCAAATTCATCTCCGTAAACGTCAGCAAGGCCAGGGCATTCGTT 1206725 Query 66298 TGGACACATCAGCGACCAATCACCATCCTGTTCTACACGACGCATAAATAGATCAGGTAT 66357 || ||||| || | ||||||| ||||| || || || ||| || ||||| || || Sbjct 1206724 GGGGCACATAAGTGTCCAATCAGCATCCGCTTTGACGCGCTTCATGAACAGATCGGGAAT 1206665 Query 66358 CCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCCGTGATTTTTGCGCAA 66417 ||| ||||| ||| ||||||||||| || ||| || |||||||||||||||||| Sbjct 1206664 CCAAAGGGCCATGAAAAGATCGCGTGCGCGAATCTCTTCCTTGCCGTGATTTTTGCGCAG 1206605 Query 66418 GTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCAT 66477 ||||| || || || | ||| ||||||| || || ||||||||||| || | || Sbjct 1206604 GTCGATAAAGTCGAACACATCGTCATGCCACGGCTCGAGGTAGATGGCAAAGGCACCAGG 1206545 Query 66478 ACGTTTGCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGCAACATCGG 66537 ||| ||| ||||||||||||||||| ||||| |||||| | ||||||||||| || Sbjct 1206544 ACGCTTGTTCCCACCTTGGTCGACGTAACGAGCAGTGTTGTTGTACACACGCAACATGGG 1206485 Query 66538 TACGAGCCCGTTAGATTTGCCATTGGTGCCGTCGATGGGGGATCCTCGTGCCCGTATATC 66597 | | ||| || || | || || || || | || || || || || || | Sbjct 1206484 AAGAATCCCATTCGAGGTTCCGTTCGTACCAGCTATATATGAGCCAGTAGCGCGGATGTT 1206425 Query 66598 GTGAACATTCAGACCAATACCACCGGCCGTCTTCGAGATGGCAGCACAATCGGCCACTGT 66657 || ||| | || ||||| |||||||| | |||||||||| || || || || Sbjct 1206424 ATGCACACTGAGCCCAATCCCACCGGCAGACTTCGAGATGAGCGCGCAGCTCTTCAGAGT 1206365 Query 66658 CCGGAATATGCCGTCAATGGAGTCACCCTTGATGGTCAGGAGGTAGCATGAACTAAGTTG 66717 | | || || ||||| || || |||| ||| | | |||| |||| || || | || Sbjct 1206364 ATCGTAAATACCCTCAATAGAATCGTCCTTCATGTTTACGAGGAAGCACGAGCTCATCTG 1206305 Query 66718 GGGTTTGGGTGTGGCGGCCGAGAAGAGGGTGGGTGTAGCGTGCGTAAAGTAATGGCGAGA 66777 || || || || | || | | | |||||| | ||||| || ||||| | | || Sbjct 1206304 AGGCTTTGGAGTTCCTGCATTGTACAAGGTGGGCGAGGCGTGGGTGAAGTATTTGTTGGA 1206245 Query 66778 CATGTAATTGTACGTCTCGATGACAGCATCAATGTTTTCGCCATGAATCCCGAGTGCACA 66837 ||| ||||| ||||| | ||| |||| ||||||||||| || | || | | Sbjct 1206244 CATAAGGTTGTAAGTCTCTACGACTTTGGGTATGTCATCGCCATGAATACC-AATGGAGA 1206186 Query 66838 -TCGCATCAGGAGGTATTGAGGCCGTTCGACCAGCCGATCC-TTGATATGCATTAAGTAG 66895 ||||| | | | ||||| || ||| | | ||| || | | || |||||| Sbjct 1206185 CGCGCATGATCATATGCTGAGGGCGCTCG-TGAACTTTTCCATTTAGTTTCAGCAAGTAG 1206127 Query 66896 GAGCGTTCCAGGGTCTTGATACCAAAGTACGAGTAATTGAAATCGTTAGCATGCACGATG 66955 ||||| || || || |||| |||||| || ||||||||| || | ||| |||||| Sbjct 1206126 GAGCGCTCTAGCGTTTTGAAACCAAAATAGTTGTAATTGAAGTCACGATCATAAACGATG 1206067 Query 66956 GC 66957 || Sbjct 1206066 GC 1206065 >seq3 Length=2072284 Score = 82.4 bits (90), Expect = 6e-11 Identities = 91/119 (76%), Gaps = 2/119 (2%) Strand=Plus/Plus Query 66339 GCATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAA 66398 |||| |||| ||||||||||| || || || || || |||||||| || | ||| || Sbjct 622052 GCATGAATAAGTCAGGTATCCATAGCGCATAAAATAGGTCGCGTGCCCGATACTCATCCT 622111 Query 66399 TGCCGTGATTTTTGCGCAAG-TCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAG 66456 | ||||||||||| | ||| || | |||| |||| || || ||||||||||| || || Sbjct 622112 TTCCGTGATTTTT-CTTAAGATCTAAGAACCCAAAAATATCTGCATGCCATGGCTCTAG 622169 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397567922474240