Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sugiyamaella_20lignohabitans_20[refseq_20GCF_5F001640025.1_202016- 05-06] 4 sequences; 15,938,258 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq2 215 4e-51 seq1 96.9 3e-15 >seq2 Length=4956242 Score = 215 bits (238), Expect = 4e-51 Identities = 600/915 (66%), Gaps = 14/915 (2%) Strand=Plus/Plus Query 61025 ATGAACCCCTATTGCAAGAGAATCCTCGTCGTTTCGTATTGTTCCCCATCGAGTATGAGG 61084 ||||||| || | ||||| || ||| | || || ||||||| || |||| | | Sbjct 3219401 ATGAACCTCTCCTTCAAGAAAACCCTAACAGATTTGTTCTGTTCCCTATTAAGTACCATG 3219460 Query 61085 ATATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATT 61144 | ||||||| |||||||| |||| || ||||| |||||||| | || || | |||| Sbjct 3219461 AGATTTGGCAAATGTACAAGCAGGCTGAGGCTTCTTTCTGGACTGCTGAAGAAATTGATT 3219520 Query 61145 TGTCCAAAGACATGAATGACTGGGAGC---GT-TTATCGAGCGGTGAACAACATTTCATT 61200 | || ||||| | ||||||||||| || ||| || | ||| | ||| || Sbjct 3219521 TAGGAAAGGACATCAGTGACTGGGAGCACCGTCTTAATGAT-GATGAGAGATTTTTTATC 3219579 Query 61201 AAACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAA 61260 | ||| | || |||||||| ||||| || ||||||||||| ||||| || | ||| Sbjct 3219580 TCTCGTGTCCTTGCATTCTTTGCTGCTTCAGATGGTATCGTCAACGAGAACTTGGTTGAA 3219639 Query 61261 CGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCC 61320 | ||| | || || ||| | | ||||| ||||| ||||| ||||| ||| Sbjct 3219640 AGATTCTCTGGTGAAGTTCAAATTCCCGAGGCAAAGTGTTTTTACGGTTTCCAAATTATG 3219699 Query 61321 ATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGG 61380 |||||||| |||| | |||| ||| | || || || || || |||| ||| Sbjct 3219700 ATGGAGAACATCCATGCAGAGACCTACTCATTACTTATTGACACTTATATCAAGGATGCT 3219759 Query 61381 GCGGAACGTGAACGATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCG 61440 ||| | | |||||| |||| || || | || || | ||| ||| || Sbjct 3219760 AAGGAGGCTAACTTTTTGTTCCATGCTATTGACAATATTCCATGTATTAAGAAGAAGGCT 3219819 Query 61441 GATTGGGCCTTCAATTGGATCACCAGTACAACGGCTACATTTGGTGAACGATTGCTGGCA 61500 || ||||| || ||||| | | | | || |||| ||| || | | || Sbjct 3219820 GACTGGGCTCTCCGATGGATTGCTGATGATCAGTCCACTTTTGCTGAGCGTCTCGTTGCC 3219879 Query 61501 TTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAG 61560 ||||| | || |||||| | || ||| |||||| |||||| ||||| ||||||||| Sbjct 3219880 TTTGCTGCCGTTGAGGGTATCTTCTTCTCTGGATCATTTGCCAGTATCTTCTGGTTGAAG 3219939 Query 61561 AAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGC 61620 || |||||||| ||||| |||||||| ||| || || ||||| || || || || ||| Sbjct 3219940 AAGCGTGGACTCATGCCTGGTCTGACGTTCTCAAACGAATTGATCTCGCGTGATGAAGGC 3219999 Query 61621 ATGCATTGTGATTTTGCTGTTTTGCTATTCAAACGCTATCTGGTGAATCGTCCGTCGGAG 61680 ||||| ||||||||| |||||| ||| || | || || || | | | || Sbjct 3220000 ATGCACACCGATTTTGCTTGTTTGCTTTTC---GGCCACCTTGTCAACAGAC---CTAAG 3220053 Query 61681 GAGCGTGTGGGTG---AGATTGTTCGTGAGGCGGTAACTATCGAACAGGAATTTCTGACT 61737 || ||| || ||||| | ||| || || | ||| ||| |||| || ||||| Sbjct 3220054 AAGTCTGTTATTGAAAAGATTATCACTGAAGCCGTTATTATTGAAAAGGAGTTCTTGACT 3220113 Query 61738 GACGCTTTGCCCGTCTCACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAA 61797 || |||||||| || | || |||||| || |||| || || ||||| Sbjct 3220114 GATGCTTTGCCATGTAGTCTTTTGGGAATGAATGCCAAGCTTATGTGCCAATACATTGAG 3220173 Query 61798 TTTGTTGCCGACCGTCTGTTGGTCGATTTGGGTATGAAGCGGATCTATAATACGAAAAAC 61857 |||||||| ||| | | || | | |||| | | | |||||| | | ||| Sbjct 3220174 TTTGTTGCTGACAGATTATTACTTTCCCTTGGTAACAGTAAGGTATATAATGCTACCAAC 3220233 Query 61858 CCATTTGATTTCATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAACGT 61917 || |||||||||||||| | || || || ||||||||| || || || ||||| | Sbjct 3220234 CCCTTTGATTTCATGGAAAACATCTCATTGTCTGGCAAGACCAACTTCTTTGAGAAGAGA 3220293 Query 61918 GTAGGCGACTATCAA 61932 || ||||||||| Sbjct 3220294 GTGTCTGACTATCAA 3220308 Score = 149 bits (164), Expect = 5e-31 Identities = 604/948 (64%), Gaps = 8/948 (1%) Strand=Plus/Minus Query 66014 GATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACAATTTCGGTGCAC 66073 ||||| | || ||||| || | || ||||||| | ||||| |||||||| |||| Sbjct 3633512 GATGCCAAATTACAGACGGCAACTTCTTCAGGAGAAGAGTACTCAACAATTTCACAGCAC 3633453 Query 66074 AGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGATTGCATGCATCC 66133 | || | | || || ||||| || ||||| |||||||||| ||| || |||||| Sbjct 3633452 AAGTTGGAGGACTTGATAGTACCCAAGTTTTGTTGGTTACTCTTGCTATTACAAGCATCC 3633393 Query 66134 TTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGATGGCGTGCCAAAGA 66193 || || | |||| | || | || |||||| ||| | || | || || | ||| || Sbjct 3633392 TTATAAAGCATGAATGGGTTACCAGTCTCAGTTTGAGCTTCGAGAATAGCATACCACAGC 3633333 Query 66194 GCGCGTGCCTTCACCGTACGTACCGCC-CTACCTTTGCGTTCGTAATGTTCGTAGAGGTG 66252 | ||||| | || | | | ||| ||||||| ||||| | || || || Sbjct 3633332 TTTTGGGCCTTGATGGTTCTT-CTGCCTCTACCTTCCTTCTCGTACTTCTCATAAAGAGC 3633274 Query 66253 TTCGAAGGATTCACCCCATACTTCGGACAGACATGGACACTTGTGTGGACACATCAGCGA 66312 |||| ||||| | || || || | ||||||| | |||||||||| | Sbjct 3633273 AACGAACTCGTCACCATAGACATCATCCAAGCCAGGACACTCATTGGGACACATCAAAGT 3633214 Query 66313 CCAATCACCATCCTGTTCTACACGACGCATAAATAGATCAGGTATCCAGAGGGCGTAGAA 66372 |||||| | | | || | ||| || | ||||| ||||| || || |||| Sbjct 3633213 CCAATCCTCGTTAGCCTTGACTCTCTTCATGAACAAGTCAGGAATCCATAGAGCCAAGAA 3633154 Query 66373 GAGATCGCGTGCTCGTTGCTCCTCAATGCCGTGATTTTTGCGCAAGTCGAGGAACTCAAA 66432 | ||| | || || || || | |||||||| || |||| || | ||| ||||| Sbjct 3633153 CAAATCTCTGGCACGGACTTCTTCCTTACCGTGATTCTTTCGCAGCTCAATGAATTCAAA 3633094 Query 66433 GATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATACGTTTGCCGCCACC 66492 | || ||||||| || |||| ||| ||||| || | || || || ||||| Sbjct 3633093 AACATCATCATGCCAAGGCTCCAAGTACATGGCAAAAGCACCTGGTCGCTTATTACCACC 3633034 Query 66493 TTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGCAACATCGGTACGAGCCCGTTAGA 66552 || || || || | ||| ||| ||||| || | |||||| || || | ||||| || Sbjct 3633033 CTGATCAACATATCTAGCAGTATTATTGAAAACTCTCAACATGGGAACAATACCGTTTGA 3632974 Query 66553 TTTGCCATTGGTGCCGTCGATGGGGGATCCTCGTGCCCGTATATCGTGAACATTCAGACC 66612 | || || || || | ||| ||| || || || |||| |||||| ||| ||| Sbjct 3632973 GGTACCGTTAGTTCCAGCAATGTAGGAGCCAGTAGCACGGATATTATGAACACTCAAACC 3632914 Query 66613 AATACCACCGGCCGTCTTCGAGATGGCAGCACAATCGGCCACTGTCCGGAATATGCCGTC 66672 ||||||||| || | ||| || || |||||| || || | | ||||| || Sbjct 3632913 AATACCACCAGCAGACTTTGAAATCAAGGCACAAGTCTTCAAAGTATCGTAAATGCCATC 3632854 Query 66673 AATGGAGTCACCCTTGATGGTCAGGAGGTAGCATGAACTAAGTTGGGGTTTGGGTGTGGC 66732 || || || |||| ||| | | | | |||| || | ||| || ||||| || | Sbjct 3632853 TATAGAATCGTCCTTCATGTTAACCAAGAAGCAAGAGGACATTTGAGGCTTGGGAGTACC 3632794 Query 66733 GGCCGAGAAGAGGGTGGGTGTAGCGTGCGTAAAGTAATGGCGAGACATGTAATTGTACGT 66792 || | | || ||||| | || || ||||| || | |||||||||| ||||| || Sbjct 3632793 AGCATTGTACAGAGTGGGGGAGGCATGTGTAAAATACTTTTGAGACATGTAGTTGTATGT 3632734 Query 66793 CTCGATGACAGCATCAATGTTTTC---GCCATGAATCCCGAGTGCACATCGCATCAGGAG 66849 || ||| || | || | || |||||||| || | || || ||| | | Sbjct 3632733 TTCAATG---GCCTTGGTGATATCAGAACCATGAATACCAACAGCTACTCTCATGATCAT 3632677 Query 66850 GTATTGAGGCCGTTCGACCAGCCGATCCTTGATATGCATTAAGTAGGAGCGTTCCAGGGT 66909 || ||| || | ||| | | | | || || | | ||||| || | ||||| || Sbjct 3632676 GTGTTGGGGTCTCTCGGCGATTTTACCATTAATCTTGAGCAAGTACGATCTTTCCAAAGT 3632617 Query 66910 CTTGATACCAAAGTACGAGTAATTGAAATCGTTAGCATGCACGATGGC 66957 ||||| ||| ||||| |||| |||||| | ||| || ||||| Sbjct 3632616 CTTGAAACCGAAGTAATTGTAAGAGAAATCACGATCATAAACAATGGC 3632569 Score = 104 bits (114), Expect = 2e-17 Identities = 241/356 (68%), Gaps = 8/356 (2%) Strand=Plus/Minus Query 65207 ATATTCAACGACTGACTCTGATCGATGTAACGACCACGATCTGCAGCCATGTCAATGATA 65266 || ||||| || ||||| |||||||| | | ||||||| |||||||| |||||||| Sbjct 3634307 ATGTTCAAAGATTGACTTTGATCGATAAAGGCAGCACGATCAGCAGCCATATCAATGATT 3634248 Query 65267 CGACGTCCC-GATATCTCCCAGACGGTCTTGTACAG-GCGACG-TA-CCTCAATTGGAAT 65322 | | || || | |||||| || ||||| |||| || | || ||||| || || Sbjct 3634247 -GTCTTCTGAGAAAGCTCCCAAACAGTCTTATACAATGCCTTGATATCCTCA---GGGAT 3634192 Query 65323 CTCCTCAATGTCCTGGACTGAACCACGACGTGCAATAATGCGATTACGCATCGACTCTGA 65382 | ||| | ||| | |||||| |||||||| | ||| ||| |||| Sbjct 3634191 GTTAGGAATATTCTGAATAGAACCATTGTTGGCAATAATTCTATTCTTCATGTTCTCTCC 3634132 Query 65383 CCACAAACCCAAATCGATAAGATGTTGAACCAAGTGACGATTGATGACTTGGAACTCGCC 65442 ||||| |||||||||| ||| | | | ||| |||| | | |||||| || || Sbjct 3634131 CCACAGTCCCAAATCGACAAGGTCCTTCAACAACCATTGATTAACAATTTGGAATTCACC 3634072 Query 65443 GGACAGTACACGACGGACATAGATGTTGGACGTGATGGGTTCAAAGGATTCAGTGTTGCC 65502 || || || | ||| ||||||||||| ||| ||||| || |||| |||| || Sbjct 3634071 GGCAAGAACTCTACGAGAGTAGATGTTGGATGTGTAAGGTTCGAAACATTCGTTGTTACC 3634012 Query 65503 TAGAATTTGGGCAGTAGATGCAGTTGGCATGGGAGCGACCAACAATGAGTTTCGCA 65558 |||||||| | || || ||||| ||||| ||||| || | | ||||||| || Sbjct 3634011 AAGAATTTGTGATGTTGAGGCAGTAGGCATAGGAGCAACGAGAAGGGAGTTTCTCA 3633956 >seq1 Length=5930846 Score = 96.9 bits (106), Expect = 3e-15 Identities = 319/491 (65%), Gaps = 4/491 (1%) Strand=Plus/Plus Query 66340 CATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAAT 66399 ||| || | |||||| ||||| || || || || | || || |||| | || || | Sbjct 4967050 CATGAACAAATCAGGGATCCAAAGAGCATAAAACAAGTCTCGAGCTCTTAATTCTTCTTT 4967109 Query 66400 GCCGTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTA 66459 |||||||||||| || || || | ||||| || || || ||||| ||||||| ||| Sbjct 4967110 GCCGTGATTTTTTCGTAACTCTAAAAACTCTAATATATCACTGTGCCAAGGTTCCAAGTA 4967169 Query 66460 GATGGCGAACGAGCCCATACGTTTGCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTT 66519 || || || | || | |||| ||||| || || || || | || |||||| Sbjct 4967170 AATAGCAAAAGCACCTGGTCTTTTGTTACCACCCTGATCTACATACCTGGCAGTATTGTT 4967229 Query 66520 GAAGACACGCAACATCGGTACGAGCCCGTTAGATTTGCCATTGGTGCCGTCGATGGGGGA 66579 || || | | |||||| || | || || || ||||||| | || | ||| | Sbjct 4967230 AAAAACTCTTAGCATCGGCACAATTCCATTGGAGCTGCCATTACTCCCAGCAATGTAAGC 4967289 Query 66580 TCCTCGT-GCCCGTATATCGTGAACATTCAGACCAATACCACCGGCCGTCTTCGAGATGG 66638 || ||| | ||| |||| |||| | |||||||| ||||| || || || ||||| Sbjct 4967290 ACC-CGTCGACCGGATATTATGAATGTGGAGACCAATCCCACCTGCAGTTTTTGAGATCA 4967348 Query 66639 CAGCACAATCGGCCACTGTCCGGAATATGCCGTCAATGGAGTCACCCTTGATGGTCAGGA 66698 ||| || || | || | | ||||| || ||||| || | || || | | | Sbjct 4967349 TAGCGCAGTCTTTTAGGGTATCGTAAATGCCTTCTATGGAATCCTCTTTCATAGCTACCA 4967408 Query 66699 GGTAGCATGAACTAAGTTGGGGTTTGGGTGTGGCGGCCGAGAAGAGGGTGGGTGTAGCGT 66758 | |||| || | ||| || || || ||| | | ||| || || |||| || | Sbjct 4967409 AGAAGCAGGACGATAATTGAGGATTAGGCGTGCCAGAGTTGAATAGTGTTGGTGACGCAT 4967468 Query 66759 GCGTAAAGTAATGGCGAGACATGTAATTG-TACGTCTCGATGACAGCATCAATGTTTTCG 66817 | || || || | ||||| |||||| || ||||||||||| ||| || | | | Sbjct 4967469 GGGTGAAATATTTTTCCGACAT-TAATTGATATGTCTCGATGACCCTATCTATATCTCTG 4967527 Query 66818 CCATGAATCCC 66828 |||||||| || Sbjct 4967528 CCATGAATACC 4967538 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397567980618560