Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sugiyamaella_20xylanicola_20[genbank_20GCA_5F001939105.2_202017-06- 23] 166 sequences; 16,642,635 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq79 223 3e-53 seq78 214 1e-50 >seq79 Length=299291 Score = 223 bits (246), Expect = 3e-53 Identities = 620/947 (65%), Gaps = 18/947 (2%) Strand=Plus/Minus Query 66002 GGAAGGGCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACA 66061 ||||||| | ||| || | ||| || ||||| | || ||||||| | ||||||||| Sbjct 119026 GGAAGGGACAAAGAAGCCAAGTTACAAACAGCCACTTCTTCAGGAGAAGAGTACTCGACA 118967 Query 66062 ATTTCGGTGCACAGATTACTGCAGCGT--ATGGTGCCCAAATTCTGTTGATTACTCTTGC 66119 ||||| ||||| || | || | || || |||| || |||||||||||||||| Sbjct 118966 ATTTCACAGCACAAGTTG--GAAGATTTGATAGTACCCAGGTTTTGTTGATTACTCTTGC 118909 Query 66120 GATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGA 66179 || || ||||||||||| | |||| | || | || |||||| ||||| ||||| || Sbjct 118908 TGTTACAAGCATCCTTGTAGAGCATGAAGGGGTTACCAGTCTCAGTTTGGGCCTCAAGGA 118849 Query 66180 TGGCGTGCCAAAGAGCGCGTGCCTTCACCGTACGTACCGCCCTACCTTTGCGTTCGT--- 66236 | || | ||| || | ||||| | || | | |||||||||| ||| | Sbjct 118848 TAGCATACCAGAGCTTCTGAGCCTTGATAGTTCTT------CTACCTTTGCCTTCTTTTT 118795 Query 66237 ---AATGTTCGTAGAGGTGTTCGAAGGATTCACCCCATACTTCGGACAGACATGGACACT 66293 | | ||| |||||| | || || || | || ||| || || ||||||| Sbjct 118794 CATACTTTTCATAGAGGGCAACAAATTCGTCTCCATAGACCTCGTCCAAACCAGGACACT 118735 Query 66294 TGTGTGGACACATCAGCGACCAATCACCATCCTGTTCTACACGACGCATAAATAGATCAG 66353 | || ||||||| | |||||| | | | || | ||| || | || | Sbjct 118734 CATTAGGGCACATCAAAGTCCAATCCTCGTTAGCCTTGACTCTCTTCATGAACAAGTCGG 118675 Query 66354 GTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCCGTGATTTTTGC 66413 | ||||| ||||| |||| | ||| | || || || || | ||||| || || | Sbjct 118674 GGATCCAAAGGGCCAAGAACAAATCTCTGGCACGGACTTCTTCCTTACCGTGGTTCTTTC 118615 Query 66414 GCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGC 66473 ||||||||| ||| ||||| | ||| | ||||| || |||| ||| |||||||| | | Sbjct 118614 GCAAGTCGATGAATTCAAAAACATCGTCGTGCCAAGGCTCCAAGTACATGGCGAAAGCAC 118555 Query 66474 CCATACGTTTGCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGCAACA 66533 | | ||| ||||||||||| || || | ||| |||||||| || | ||||| Sbjct 118554 CTGGTCTCTTGTTACCACCTTGGTCAACATATCTAGCAGTGTTGTTGAAAACTCTCAACA 118495 Query 66534 TCGGTACGAGCCCGTTAGATTTGCCATTGGTGCCGTCGATGGGGGATCCTCGTGCCCGTA 66593 | || || | |||||||| | || || || ||| | || ||| || || || | Sbjct 118494 TAGGGACAATACCGTTAGAAGTACCGTTAGTACCGGCAATATAGGAACCAGTGGCACGGA 118435 Query 66594 TATCGTGAACATTCAGACCAATACCACCGGCCGTCTTCGAGATGGCAGCACAATCGGCCA 66653 ||| ||| | | ||| |||||||||||| || | ||||||||| ||||| || Sbjct 118434 TATTGTGGATACTCAAACCAATACCACCTGCAGACTTCGAGATCAAGGCACAGGTCTTCA 118375 Query 66654 CTGTCCGGAATATGCCGTCAATGGAGTCACCCTTGATGGTCAGGAGGTAGCATGAACTAA 66713 || | || || |||||||||||| |||| ||| | | | | | || || | Sbjct 118374 AAGTATCATAGATACCCTCAATGGAGTCATCCTTCATGTTTACCAAGAAACAAGACGACA 118315 Query 66714 GTTGGGGTTTGGGTGTGGCGGCCGAGAAGAGGGTGGGTGTAGCGTGCGTAAAGTAATGGC 66773 ||| || ||||| || | || | | | || || | ||| || |||||||| | Sbjct 118314 TTTGTGGCTTGGGAGTACCAGCATTGTACAAAGTAGGAGAAGCATGAGTAAAGTACTTTT 118255 Query 66774 GAGACATGTAATTGTACGTCTCGATGACAGCATCAATGTTTTCGCCATGAATCCCGAGTG 66833 | |||||||||||||| || || ||| | |||||| ||||||| || || | | Sbjct 118254 GTGACATGTAATTGTAAGTTTCAATGGCCTTGGCAATGTCCGCGCCATGGATACCAACAG 118195 Query 66834 CACATCGCATCAGGAGGTATTGAGGCCGTTCGACCAGCCGATCC-TTGATATGCATTAAG 66892 | || ||| | | | |||||| | || | || ||| ||||| | | ||| Sbjct 118194 CTACTCTCATGATCATATGTTGAGGTCTCTC-AGCAATTTTTCCGTTGATCTTGAGCAAG 118136 Query 66893 TAGGAGCGTTCCAGGGTCTTGATACCAAAGTACGAGTAATTGAAATC 66939 || || | ||||| |||||||| ||| ||||| |||| |||||| Sbjct 118135 TAAGATCTTTCCAAGGTCTTGAAACCGAAGTAGTTGTAAGAGAAATC 118089 >seq78 Length=1347436 Score = 214 bits (236), Expect = 1e-50 Identities = 594/900 (66%), Gaps = 22/900 (2%) Strand=Plus/Minus Query 61025 ATGAACCCCTATTGCAAGAGAATCCTCGTCGTTTCGTATTGTTCCCCATCGAGTATGAGG 61084 ||||||| || | || ||||| ||| | || || |||||||| ||| |||| | | Sbjct 285165 ATGAACCTCTCCTTCAGGAGAACCCTAACAGATTTGTCTTGTTCCCTATCAAGTACCATG 285106 Query 61085 ATATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATT 61144 | || |||| |||||||| | || || || || |||||||| | || ||| | ||| Sbjct 285105 AGATCTGGCAAATGTACAAGCAAGCTGAGGCCTCTTTCTGGACTGCTGAAGAGATTGATC 285046 Query 61145 TGTCCAAAGACATGAATGACTGGGAGC---GT-TTATCGAGCGGTGAACAACATTTCATT 61200 | || || || | ||||||||| | || ||| || | ||| | || || Sbjct 285045 TTGGAAAGGATATTAGTGACTGGGAACACCGTCTTAATGAT-GATGAGAGATTCTTTATC 284987 Query 61201 AAACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAA 61260 | |||| | || |||||||| || || || ||||| ||||||||||| | | || Sbjct 284986 TCTCGTGTGCTCGCTTTCTTTGCTGCCTCCGATGGTATTGTCAATGAGAACCTTGTTGAG 284927 Query 61261 CGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCC 61320 | ||| | ||||| || | | ||||| ||||||||||| ||||| || Sbjct 284926 AGATTCTCTGGTGAGGTCCAGATTCCTGAGGCCAAGTGTTTCTACGGATTCCAAATCATG 284867 Query 61321 ATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGG 61380 ||||||||| |||| | |||| ||| | || || ||||| || |||| ||| Sbjct 284866 ATGGAGAATATCCATGCTGAGACTTACTCCTTACTTATTGATACTTATATCAAGGATGCT 284807 Query 61381 GCGGAACGTGAACGATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCG 61440 ||| | | |||||| |||| || || | || || | ||| ||| || Sbjct 284806 AAGGAGGCTAACTTCTTGTTCCATGCTATTGATAACATTCCTTGTATTAAGAAGAAGGCT 284747 Query 61441 GATTGGGCCTTCAATTGGATCACCAGTA--CAACGGCTACATTTGGTGAACGATTGCTGG 61498 || |||||| | | ||||||| | | ||| |||| |||| ||| || | | | Sbjct 284746 GACTGGGCCCTAACTTGGATCTCTGATGATCAAT--CTACCTTTGCTGAGCGTCTCGTTG 284689 Query 61499 CATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGA 61558 | || || | ||||||||| | || ||| ||| || ||||| ||||||||||||| Sbjct 284688 CTTTCGCTGCTGTCGAGGGTATCTTCTTCTCTGGTTCATTTGCTAGTATCTTTTGGTTGA 284629 Query 61559 AGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGG 61618 |||| ||||| |||||||| ||| |||| ||| ||||||||||| || || || || | Sbjct 284628 AGAAGCGTGGTCTTATGCCTGGTTTGACTTTCTCTAATGAGTTGATTTCTCGTGATGAAG 284569 Query 61619 GCATGCATTGTGATTTTGCTGTTTTGCTATTCAAACGCTATCTGGTGAATCGTCCGTCGG 61678 ||||||| |||||| ||| |||||| || || | || || || | | | Sbjct 284568 GCATGCACACTGATTTCGCTTGTTTGCTTTT---TGGCCACCTTGTCAACAGAC---CTA 284515 Query 61679 AGGAGCGTGTGGGTG---AGATTGTTCGTGAGGCGGTAACTATCGAACAGGAATTTCTGA 61735 || || ||| | || ||||| || ||| || || ||| ||| ||||||| ||| Sbjct 284514 AGAAGTCTGTTGTTGAAAAGATTATTACTGAAGCTGTCGGTATTGAAAAGGAATTCTTGA 284455 Query 61736 CTGACGCTTTGCCCGTCTCACTCATC--GGCATGAATTGTGGACTAATGTCGCAGTATAT 61793 |||| || ||| || | | | || || || |||||| | || |||| || || || Sbjct 284454 CTGATGCCTTG-CCATGT-AGTCTTCTTGGAATGAATGCTAAGCTCATGTGTCAATACAT 284397 Query 61794 TGAATTTGTTGCCGACCGTCTGTTGGTCGATTTGGGTATGAAGCGGATCTATAATACGAA 61853 ||| ||||| || ||| | | ||| | | || | || | |||| ||| | | Sbjct 284396 TGAGTTTGTCGCTGACAGATTATTGCTTTCCCTTGGAAACAACAAGGTCTACAATGCTAC 284337 Query 61854 AAACCCATTTGATTTCATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAA 61913 || || || ||||||||||| | || || || ||| ||||| ||||| |||||||| Sbjct 284336 TAATCCCTTCGATTTCATGGAGAACATCTCTCTCTCTGGTAAGACTAATTTCTTCGAGAA 284277 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397567195670240