Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Wickerhamia_20fluorescens_20[genbank_20GCA_5F001599155.1_202016-03- 01] 20 sequences; 13,178,500 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq1 224 8e-54 >seq1 Length=2974285 Score = 224 bits (248), Expect = 8e-54 Identities = 604/915 (66%), Gaps = 14/915 (2%) Strand=Plus/Plus Query 61025 ATGAACCCCTATTGCAAGAGAATCCTCGTCGTTTCGTATTGTTCCCCATCGAGTATGAGG 61084 |||| || || ||| | ||||| |||||||||| || | ||||| || | || | | Sbjct 232409 ATGAGCCTCTTTTGAAGGAGAACACTCGTCGTTTTGTTCTTTTCCCTATTAAATACCACG 232468 Query 61085 ATATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATT 61144 | ||||||| |||||||| || || ||||| || || ||||| | ||||| |||||| Sbjct 232469 AGATTTGGCAAATGTACAAGAAAGCAGAAGCATCTTTTTGGACTGCAGAGGAAATCGATT 232528 Query 61145 TGTCCAAAGACATGAATGACTGGGAGCGTTTATCGAGCGGTGAACAACATTTC---ATTA 61201 || ||||||| |||||||| | | | || || | | | |||| ||| Sbjct 232529 TGGGAAAAGACACTCATGACTGGAACAATCGCTTGAACGACAACGAGCGTTTCTTCATTT 232588 Query 61202 AACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAAC 61261 | | | ||||| || || || ||||| || ||||| || || ||||| || |||| Sbjct 232589 CCCGTATTTTGGCATTTTTCGCTGCTTCCGATGGTATTGTTAACGAGAACTTGGTGGAGA 232648 Query 61262 GTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCA 61321 ||| | ||||| || | | || || || || ||||| ||||| || | Sbjct 232649 ACTTCTCTGCCGAGGTTCAGATTCCAGAAGCCAAATGCTTTTACGGTTTCCAAATCATGA 232708 Query 61322 TGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGG 61381 |||| ||| ||||||| |||| ||| | | ||||| || || |||| ||| | Sbjct 232709 TGGAAAATATCCACTCAGAGACCTACTCCTTGTTGATCGACACCTATATCAAGGACCCCA 232768 Query 61382 CGGAACGTGAACGATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGG 61441 ||| || || |||||||| || ||||| || || | || ||| || | Sbjct 232769 AGGAGGCAGACTTTTTATTCAATGCTATTGAGACTATTCCTTGCATCAAAAAGAAGGCTG 232828 Query 61442 ATTGGGCCTTCAATTGGATCACCAGT-ACAACGGCTACATTTGGTGAACGATTGCTGGCA 61500 | ||||| || ||||||| | || | | || |||||| ||||| | | ||| Sbjct 232829 ACTGGGCTTTACGCTGGATCAGTGATGACGAGGCCTT-ATTTGGCGAACGTCTTGTTGCA 232887 Query 61501 TTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAG 61560 ||||| | || || ||| | || ||||||||||||||||| | ||||||||||||||| Sbjct 232888 TTTGCTGCTGTTGAAGGTATTTTCTTCAGTGGATCGTTTGCATCCATCTTTTGGTTGAAG 232947 Query 61561 AAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGC 61620 || | || | ||||| ||| |||| ||| ||| ||||| || | || || ||||| Sbjct 232948 AAGAGAGGCTTGATGCCTGGTTTGACTTTCTCCAACGAGTTAATCTGCCGTGATGAGGGT 233007 Query 61621 ATGCATTGTGATTTTGCTGTTTTGCTATTCAAACGCTATCTGGTGAATCGTCCGTCGGAG 61680 |||| ||||||||| ||| ||||| | || || || | || || | Sbjct 233008 TTGCACACCGATTTTGCTTGCTTGTTATTCTCCCACT---TGCAAAACAGACC--CGATG 233062 Query 61681 GAGC--GTGTGGGTGAGATTGTTCGTGAGGCGGTAACTATCGAACAGGAATTTCTGACTG 61738 || ||| | ||||| | ||||| || |||| ||| |||| ||| | |||| Sbjct 233063 CTGCTATTGTCGAGAAGATTATCACAGAGGCCGTTGCTATTGAAAAGGAGTTTTTCACTG 233122 Query 61739 ACGCTTTGCCCGTCTCACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAAT 61798 | |||||||| | || | | || ||||| ||| | | |||| ||||| | || | Sbjct 233123 ATGCTTTGCCTATTTCGTTGTTGGGTATGAACTGTAAATTGATGTGCCAGTACGTGGAGT 233182 Query 61799 TTGTTGCCGACCGTCTGTTGGTCG-ATTTGGGTATGAAGCGGATCTATAATACGAAAAAC 61857 ||||||||||| | | | |||| ||| || | ||| || | || ||| | || Sbjct 233183 TTGTTGCCGACAGATTACTTGTCGCATTAGGCAACGAAAAGG-TTTACAATGTTACTAAT 233241 Query 61858 CCATTTGATTTCATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAACGT 61917 || ||||| || ||||| | |||||| ||| || ||||| || |||||||| || | Sbjct 233242 CCCTTTGACTTTATGGAAAACATTTCGTTGGCAGGAAAGACCAACTTTTTCGAAAAGAGA 233301 Query 61918 GTAGGCGACTATCAA 61932 || | ||||| ||| Sbjct 233302 GTTAGTGACTACCAA 233316 Score = 118 bits (130), Expect = 8e-22 Identities = 422/651 (65%), Gaps = 14/651 (2%) Strand=Plus/Minus Query 65993 ACAAACTTGGGAAGGGCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTA 66052 |||||| |||||| || | |||||| | ||| || ||||| | ||| || || | || Sbjct 199993 ACAAACGAGGGAAGTGCGATAGATGCCAAGTTACATACAGCAACCTCATCTGGCGAGGAG 199934 Query 66053 TACTCGACAATTTCGGTGCACAGATTACTGCAGCGT--ATGGTGCCCAAATTCTGTTGAT 66110 || ||||||||||| |||| ||| | || | ||| ||||| |||| ||||| Sbjct 199933 TATTCGACAATTTCACAACACAAATTG--GAAGATTTGATGACACCCAAGTTCTTTTGAT 199876 Query 66111 TACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGG 66170 || | || |||||||||||| ||||||| |||| | || || ||||| || ||| | Sbjct 199875 TAGTTTTTTTATTGCATGCATCTTTGTACAACATGAATGGGGTACCGGTTTCGGTTTGCG 199816 Query 66171 ACTCAATGATGGCGTGCCAAAGAGCGCGTGCCTTCACCGTACGTACCGCC-CTACCTTTG 66229 ||| | ||||||| ||| | | ||||| | || | | | || | || Sbjct 199815 CCTCCAAAATGGCGTACCATAATTTCTGAGCCTTGATAGT-CTTTCTTCCACGGTTTTCA 199757 Query 66230 CGTTCGTAATGTTCGTAGAGGTGTTCGAAGGATTCACCCCATACTTCGGACAGACATGGA 66289 |||||||| | ||||| | || || ||||| | || ||||||| || | | Sbjct 199756 CGTTCGTACTTCTCGTACAATGCCTCAAACTCATCACCGTAAACATCGGACAAACCTTGG 199697 Query 66290 CACTTGTGTGGACACATCAGCGACCAATCACCATCCTGTTCTACACGACGCATAAATAGA 66349 || | ||| | | || | ||| ||| ||| ||| || || | |||||| | Sbjct 199696 GCCTCATTAGGAGAGAACAAGGTCCACTCAGCATTCTGCTCAACTCTCTTCATAAACAAG 199637 Query 66350 TCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTG--CTCGTTGCTCCTCAATGCCGTGAT 66407 ||||| ||||| | || ||| | ||| | || ||| || || || | || |||| Sbjct 199636 TCAGGAATCCACAATGCTGGGAACAAATCTCTTGCCCTCATT--TCTTCCTTACCATGAT 199579 Query 66408 TTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGA 66467 | || | | |||| ||| |||||||| || || ||||||||||||| || | ||| | Sbjct 199578 TCTTTCTAATATCGATGAAATCAAAGATATCCGCGTGCCATGGTTCCAAATATAAGGCAA 199519 Query 66468 ACGAGCCCATACGTTTGCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACAC 66527 | | || | || ||||| || || ||||| ||||| || ||||| || | Sbjct 199518 ATGCACCGGGTCTCTTATTACCACCCTGATCCACGTAACGAGCAGTGTTATTGAAAACTC 199459 Query 66528 GCAACATCGGTACGAGCCCGTTAGATTTGCCATTGGTGCCGTCGATGGGGGATCC--TCG 66585 | ||| || | || || ||||| | || ||||| || | ||| || || ||| Sbjct 199458 TAACCATAGGAATGATACCATTAGAGGTACCGTTGGTACCAGCAATGTAGGCACCAGTCG 199399 Query 66586 TGCCCGTATATCGTGAACATTCAGACCAATACCACCGGCCGTCTTCGAGAT 66636 | || || | ||| | | | ||||||||| || || |||| || || Sbjct 199398 AG--CGAATGTTGTGTATGTGTAAACCAATACCTCCAGCACTCTTGGAAAT 199350 Score = 116 bits (128), Expect = 3e-21 Identities = 317/481 (66%), Gaps = 6/481 (1%) Strand=Plus/Minus Query 65078 TCGACCGTGAACTGGATCGCATTAGCAGCCGCCTTGGTCCTAAGATAGTACATGCCGGTC 65137 || || ||||| ||||| ||| | || |||| ||| || | |||||||| || || Sbjct 200896 TCTACTGTGAATTGGATGGCAGCCGAGGCAGCCTGGGTTCTCAAGTAGTACATACCTGTT 200837 Query 65138 TTGAGGCCAGCACGCCAAGCATAGAAATGCATCGATGATAATTTTGCATAATTCGGCTCG 65197 ||||| || |||| | || ||||||||||| | |||||| | | || || Sbjct 200836 TTGAGTCCCTTCTTCCAACCGTAAAAATGCATCGAGGTTAATTTACCCATTGTAGGATCC 200777 Query 65198 GCCACATGCATATTCAACGACTGACTCTGATCGATGTAACGACCACGATCTGCAGCCATG 65257 | || || ||||| ||||| ||||| ||| | |||| ||||||||||| Sbjct 200776 TTGATGTGGATGTTCAAAGACTGGGATTGATCAATGAAGGCGGCACGGTCTGCAGCCATA 200717 Query 65258 TCAATGATACGACGTCCCGATATCTCCCAGACGGTCTTGTACAGGCGACGT-ACCTCAAT 65316 ||||| || | || || ||||| ||||||||||||| || | | || || Sbjct 200716 TCAATAATGTGTTTCTGAGAGATTTCCCATACGGTCTTGTACAA-CGCCTTGACTTCGTC 200658 Query 65317 TGGAATCTCCTCAATGTCCTGGACTGAACCACGACGT--GCAATAATGCGATTACGCATC 65374 || || | | ||||| ||||| | || | ||| ||| || ||| Sbjct 200657 AGGGATGTTGGGCAACAGCTGGATCGAACC--GTTGTTGGAAATGATGTTGTTCTTCATG 200600 Query 65375 GACTCTGACCACAAACCCAAATCGATAAGATGTTGAACCAAGTGACGATTGATGACTTGG 65434 || || ||| | ||||||||| | ||||| | | ||| | | | |||| | |||| Sbjct 200599 GAGTCGTTCCAGATACCCAAATCCACAAGATCGCGTAACAAATAAGGGTTGACAATTTGG 200540 Query 65435 AACTCGCCGGACAGTACACGACGGACATAGATGTTGGACGTGATGGGTTCAAAGGATTCA 65494 || || || | || ||| | | | ||||| ||||| ||| |||||||||| | || Sbjct 200539 AATTCACCAGCCAATACTCTTCTGGAGTAGATATTGGAAGTGTAGGGTTCAAAGCACTCG 200480 Query 65495 GTGTTGCCTAGAATTTGGGCAGTAGATGCAGTTGGCATGGGAGCGACCAACAATGAGTTT 65554 |||| || | ||||||| ||| ||||| || ||||||||||| ||||| || || ||| Sbjct 200479 TTGTTACCCAATATTTGGGAAGTGGATGCCGTGGGCATGGGAGCAACCAATAACGAATTT 200420 Query 65555 C 65555 | Sbjct 200419 C 200419 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397567903092800