Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20deformans_20[genbank_20GCA_5F001600075.1_202016-03-01] 44 sequences; 20,877,144 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq6 100 9e-19 >seq6 Length=1274382 Score = 100 bits (110), Expect = 9e-19 Identities = 330/519 (64%), Gaps = 97/519 (19%) Strand=Plus/Plus Query 6 TCTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTAT 65 ||||| | |||||| || |||||||||||| |||||||| |||||| || |||||||| Sbjct 607900 TCTTTAGTTCTACATGACATTTCTGTTCTCTTTGAGTCCCTCTTAGGTCATTTGCGTTAT 607959 Query 66 GGTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGAT 125 || |||| |||| |||||||||||||||| |||| | ||||| ||| Sbjct 607960 CTTTCAACACATGT---------TCCAAACTCCCCACCTGGCAATATTTACAACCTGGA- 608009 Query 126 CGGCCCGCGAAGGACCTTAACGCCAGAAAATGGTCGGTGAAGACCAGTTCCGCTTCATTG 185 || || ||||||| ||| | | || |||| | ||| | Sbjct 608010 -----------------AAATGCTAGAAAAT-GTC-----AAATCACTTCCAC-TCACTC 608045 Query 186 ATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCACTT 245 | ||||||| |||| |||| |||||| | ||| || || | || || ||||| | Sbjct 608046 AAGAAGTAAAGAAACAATAATGGTAGTTGGATTGCATTTATTCTGATAC--ACCCCACGT 608103 Query 246 ATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTT 305 |||| ||| || ||| ||||||| ||| |||| |||| |||| Sbjct 608104 ---------CTCTTCAGTGAT--------GTCAAACTAGAGCCAACCTCATCAGGTTCTT 608146 Query 306 CTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGAT 365 ||| |||||| |||| | |||| || | | || ||| ||| || Sbjct 608147 -TTTTCCCGCTAATTCTGTCAAGTCC----------------ATCCACTGGATGGTATAT 608189 Query 366 AGGGACAGTGGGAATCTCGTTAATCCAT-TCATGCGCGTCACTAATTAGATGACGAGGCA 424 ||||| ||| ||| | ||||||||||| | || | |||||| |||| || || Sbjct 608190 AGGGAGAGTTAGAAGCCCGTTAATCCATGACCTG-GTGTCACTGATTA-------AGACA 608241 Query 425 TTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTT 484 ||||||| || || ||| | | ||| ||||| || || ||||| || Sbjct 608242 GTTGGCTAGCTCAAAAGA--CCTGGTTTCTCCCCCCACTT------------TTGAACTT 608287 Query 485 CTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACAT 523 ||||||||||| ||||| ||||| ||||| ||||| Sbjct 608288 CTTCACTTTGA----CAGAGGACTGGTTAGAAACCACAT 608322 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1635199280512