Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20deformans_20[genbank_20GCA_5F001600075.1_202016-03-01] 44 sequences; 20,877,144 total letters Query= NC_032108.1 Length=589068 Score E Sequences producing significant alignments: (Bits) Value seq1 105 3e-17 seq4 100 1e-15 >seq1 Length=2434256 Score = 105 bits (116), Expect = 3e-17 Identities = 112/147 (76%), Gaps = 2/147 (1%) Strand=Plus/Minus Query 364430 GTCATACGAGAGGGAATGGAGAGAGGGTTGATGATGATGTCAGGCACCATGCCGTCAGCG 364489 |||||||| |||||||||| | | |||||||||||||| || || || | || ||||| Sbjct 1009342 GTCATACGCGAGGGAATGGCGTGGGGGTTGATGATGATATCGGGGACAACTCCCTCAGCA 1009283 Query 364490 GTAAAGGGCATATCTTCGGGAGGAACGATGAGACCAATGGTTCCCTTTTGCGCATAGCGA 364549 | ||||||||||| ||| | || | | ||||||||| ||||| || | | ||| Sbjct 1009282 GAGAAGGGCATATCCTCGTGTCGATAAGTCACACCAATGGTACCCTTCTGTCCGTGACGA 1009223 Query 364550 GAAGCAAACTTGTCGCCAATGACTGGG 364576 || ||||||||||| ||||| ||||| Sbjct 1009222 GAGGCAAACTTGTCTCCAAT--CTGGG 1009198 >seq4 Length=1325655 Score = 100 bits (110), Expect = 1e-15 Identities = 239/359 (67%), Gaps = 2/359 (1%) Strand=Plus/Plus Query 12688 CAGAGTAGACACTTGCTTACTGTTGCCTAGAGGTAGTTTCTTGAGAACATCGTAAAAGAA 12747 |||||||| ||| ||||| | | || ||| | || ||| || ||||| ||| Sbjct 401607 CAGAGTAGGCACCTGCTTGGCGGTTCCCAGACCCATGATCATGATCACGTCGTAGTAGAT 401666 Query 12748 AACTTTCATGCCTAGACACTCTGCTAGGACAGAGACCTGAGAACCAATGTTACCATAACC 12807 || |||||||| | |||| || || ||||| | ||| |||||||||| || || || Sbjct 401667 GACGTTCATGCCCATGGACTCGGCCAGAACAGACAGCTGGGAACCAATGTGGCCGTAGCC 401726 Query 12808 TACTATACCTAGGGTCTTTCCTCTAACTTCACGGCAACCTTGAGAAGTC-TTGTTCCAAA 12866 || || || || ||||| |||| | || | ||| | | || || | |||||||| Sbjct 401727 CACAATGCCCAGAGTCTTGCCTCGGATCTCCCAGCA-CTTGGACGAGACCTTGTTCCAGG 401785 Query 12867 TGCCTTGGTGTAGTTCTTTGTTTCTATCTCCAACCTGACGAGAAAGATTAATTAGTTGTC 12926 | || ||| | || |||||| || || | ||| || || || | || | || | Sbjct 401786 TTCCGGCGTGCATCTCGATGTTTCGGTCGCCTAGCTGTCGCGACAGCATGATGATTTCGC 401845 Query 12927 CTATGATGAGCTCTGCCACGCTTCTAGTGTTGCAAAAGGGAGAATTAAAGACTGCAATGC 12986 |||| |||||| |||||| | | |||| ||||||| || || || || ||||| | Sbjct 401846 AGATGACGAGCTCGGCCACGGACCGCGAGTTGGAAAAGGGCGAGTTGAACACGGCAATAC 401905 Query 12987 CTAGTTTGGTAGCCATGTCTAGATTAACCTGATCGTAACCAATGCAGAAGCATCCTATG 13045 | |||| || || |||| ||||| | | || ||||||||||| || ||| Sbjct 401906 CGTTGTTGGCGGCGTACTCGAGATCGACCTGGTTGGTGCCGATGCAGAAGCAGCCGATG 401964 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1884885337395292