Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20lipolytica_20[genbank_20GCA_5F001307795.1_202016-05-31] 29 sequences; 20,308,363 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq24 174 7e-41 seq6 102 3e-19 >seq24 Length=2283 Score = 174 bits (192), Expect = 7e-41 Identities = 122/138 (88%), Gaps = 2/138 (1%) Strand=Plus/Plus Query 546 TTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTG 605 ||||||||| ||| | ||||||||||||||||||||||||||||||| |||||||| Sbjct 6 TTTGAGTAAACACAT--CCATTGGGACCCGAAAGATGGTGAACTATGCCTGGATAGGGTG 63 Query 606 AAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAA 665 ||| |||||||||||||| |||||||||| |||||||||| |||||||||||||||| Sbjct 64 AAGTCAGAGGAAACTCTGATGGAGGCTCGTAGCGGTTCTGACGTGCAAATCGATCGTAGG 123 Query 666 ATTTGGGTATAGGGGCGA 683 || ||||||||||||||| Sbjct 124 ATCTGGGTATAGGGGCGA 141 >seq6 Length=3777980 Score = 102 bits (112), Expect = 3e-19 Identities = 73/83 (88%), Gaps = 2/83 (2%) Strand=Plus/Minus Query 546 TTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTG 605 ||||||||| ||| | ||||||||||||||||||||||||||||||| |||||||| Sbjct 3130614 TTTGAGTAAACACAT--CCATTGGGACCCGAAAGATGGTGAACTATGCCTGGATAGGGTG 3130557 Query 606 AAGCCAGAGGAAACTCTGGTGGA 628 ||| |||||||||||||| |||| Sbjct 3130556 AAGTCAGAGGAAACTCTGATGGA 3130534 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079999377950