Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20lipolytica_20[genbank_20GCA_5F001307795.1_202016-05-31] 29 sequences; 20,308,363 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq24 700 0.0 seq6 381 2e-103 seq1 78.8 3e-12 >seq24 Length=2283 Score = 700 bits (776), Expect = 0.0 Identities = 473/528 (90%), Gaps = 21/528 (4%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||| |||||| ||||||||||||||| |||||||||||||||||| ||||||||| Sbjct 1846 CTTTTGTTCTACATGAGATTTCTGTTCTCATTGAGTCCCCCTTAGGACATCTGCGTTATC 1787 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 |||||||||||||||||||||||||||||||||||||||||||||| ||| || ||| Sbjct 1786 TTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCTTCAGCCTGGA-- 1729 Query 127 GGCCCGCGAAGGACCTTAACGCCAGAAAATGGTCGGTGAAGACCAGTTCCGCTTCATTGA 186 ||||| | || |||||||||| | | || ||| |||| ||| | | | Sbjct 1728 --------AAGGA-----ATGCTAGAAAATGGTTGTTAAA--CCACTTCCACTT-ACTAA 1685 Query 187 TTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCACTTA 246 |||||||| |||||||||||||||||||||||||| |||||||| ||||||||||| Sbjct 1684 ATAAGTAAAGAAACGATAAGGGTAGTGGTATTTCACCGGCGCCGAA---GCTCCCACTTA 1628 Query 247 TTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTC 306 ||||||||| | | ||| ||||||| ||| ||||||||||||||||||||||||||| Sbjct 1627 TTCTACACCCCCTATGTCTCTTCACAATGTCAAACTAGAGTCAAGCTCAACAGGGTCTTC 1568 Query 307 TTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATA 366 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 1567 TTTCCCCGCTGATTCTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATA 1508 Query 367 GGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATT 426 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1507 GGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATT 1448 Query 427 TGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCT 486 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1447 TGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCT 1388 Query 487 TCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACAT 534 ||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 1387 TCACTTTGACATTCAGAGCACTGGGCAGAAATCACTTTGCGTCAACAT 1340 >seq6 Length=3777980 Score = 381 bits (422), Expect = 2e-103 Identities = 227/234 (97%), Gaps = 4/234 (2%) Strand=Plus/Minus Query 303 CTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTA 362 |||||||||| |||||||| ||||||||||||||||||||||||||||||||| |||||| Sbjct 1981019 CTTCTTTCCC-GCTGATTCTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTACATAGTA 1980961 Query 363 GATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGG 422 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1980960 GATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGG 1980901 Query 423 CATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACC--CGCGCTTGGTTGA 480 ||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| Sbjct 1980900 CATTTGGCTACCTTAAGAGAG-CATAGTTACTCCCGCCGTTTACCCGCGCGCTTGGTTGA 1980842 Query 481 ATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACAT 534 ||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 1980841 ATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACTTTGCGTCAACAT 1980788 Score = 125 bits (138), Expect = 2e-26 Identities = 91/105 (87%), Gaps = 3/105 (3%) Strand=Plus/Minus Query 225 GCGCCGAAACGGCTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAG 284 |||||||| |||||||||||||||||||| | | ||| | ||||| ||| ||||| Sbjct 3506951 GCGCCGAA---GCTCCCACTTATTCTACACCCCCTATGTCTCTACACAATGTCAAACTAG 3506895 Query 285 AGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGC 329 ||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 3506894 AGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCTGCCAAGC 3506850 >seq1 Length=2339597 Score = 78.8 bits (86), Expect = 3e-12 Identities = 64/75 (85%), Gaps = 2/75 (3%) Strand=Plus/Minus Query 284 GAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTT-CCCTTGGC 342 ||||||||||||| |||||||||||| ||||| |||| | |||||| ||| |||||| Sbjct 1382098 GAGTCAAGCTCAAAAGGGTCTTCTTT-CCCGCAGATTATGACAAGCCTGTTGACCTTGGA 1382040 Query 343 TGTGGTTTCGCTAGA 357 | ||||||||||||| Sbjct 1382039 TATGGTTTCGCTAGA 1382025 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1635199525792