Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Yarrowia_20lipolytica_20[genbank_20GCA_5F001307795.1_202016-05-31]
29 sequences; 20,308,363 total letters
Query= AAMG01002199.1
Length=543
Score E
Sequences producing significant alignments: (Bits) Value
seq24 700 0.0
seq6 381 2e-103
seq1 78.8 3e-12
>seq24
Length=2283
Score = 700 bits (776), Expect = 0.0
Identities = 473/528 (90%), Gaps = 21/528 (4%)
Strand=Plus/Minus
Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66
|||||| |||||| ||||||||||||||| |||||||||||||||||| |||||||||
Sbjct 1846 CTTTTGTTCTACATGAGATTTCTGTTCTCATTGAGTCCCCCTTAGGACATCTGCGTTATC 1787
Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126
|||||||||||||||||||||||||||||||||||||||||||||| ||| || |||
Sbjct 1786 TTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCTTCAGCCTGGA-- 1729
Query 127 GGCCCGCGAAGGACCTTAACGCCAGAAAATGGTCGGTGAAGACCAGTTCCGCTTCATTGA 186
||||| | || |||||||||| | | || ||| |||| ||| | | |
Sbjct 1728 --------AAGGA-----ATGCTAGAAAATGGTTGTTAAA--CCACTTCCACTT-ACTAA 1685
Query 187 TTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCACTTA 246
|||||||| |||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 1684 ATAAGTAAAGAAACGATAAGGGTAGTGGTATTTCACCGGCGCCGAA---GCTCCCACTTA 1628
Query 247 TTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTC 306
||||||||| | | ||| ||||||| ||| |||||||||||||||||||||||||||
Sbjct 1627 TTCTACACCCCCTATGTCTCTTCACAATGTCAAACTAGAGTCAAGCTCAACAGGGTCTTC 1568
Query 307 TTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATA 366
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1567 TTTCCCCGCTGATTCTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATA 1508
Query 367 GGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATT 426
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1507 GGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATT 1448
Query 427 TGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCT 486
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1447 TGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCT 1388
Query 487 TCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACAT 534
||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1387 TCACTTTGACATTCAGAGCACTGGGCAGAAATCACTTTGCGTCAACAT 1340
>seq6
Length=3777980
Score = 381 bits (422), Expect = 2e-103
Identities = 227/234 (97%), Gaps = 4/234 (2%)
Strand=Plus/Minus
Query 303 CTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTA 362
|||||||||| |||||||| ||||||||||||||||||||||||||||||||| ||||||
Sbjct 1981019 CTTCTTTCCC-GCTGATTCTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTACATAGTA 1980961
Query 363 GATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGG 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1980960 GATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGG 1980901
Query 423 CATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACC--CGCGCTTGGTTGA 480
||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct 1980900 CATTTGGCTACCTTAAGAGAG-CATAGTTACTCCCGCCGTTTACCCGCGCGCTTGGTTGA 1980842
Query 481 ATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACAT 534
||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1980841 ATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACTTTGCGTCAACAT 1980788
Score = 125 bits (138), Expect = 2e-26
Identities = 91/105 (87%), Gaps = 3/105 (3%)
Strand=Plus/Minus
Query 225 GCGCCGAAACGGCTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAG 284
|||||||| |||||||||||||||||||| | | ||| | ||||| ||| |||||
Sbjct 3506951 GCGCCGAA---GCTCCCACTTATTCTACACCCCCTATGTCTCTACACAATGTCAAACTAG 3506895
Query 285 AGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGC 329
||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 3506894 AGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCTGCCAAGC 3506850
>seq1
Length=2339597
Score = 78.8 bits (86), Expect = 3e-12
Identities = 64/75 (85%), Gaps = 2/75 (3%)
Strand=Plus/Minus
Query 284 GAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTT-CCCTTGGC 342
||||||||||||| |||||||||||| ||||| |||| | |||||| ||| ||||||
Sbjct 1382098 GAGTCAAGCTCAAAAGGGTCTTCTTT-CCCGCAGATTATGACAAGCCTGTTGACCTTGGA 1382040
Query 343 TGTGGTTTCGCTAGA 357
| |||||||||||||
Sbjct 1382039 TATGGTTTCGCTAGA 1382025
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1635199525792
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |