Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20lipolytica_20[genbank_20GCA_5F001761485.1_202016-10-12] 7 sequences; 20,547,992 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq6 401 2e-109 seq1 78.8 3e-12 >seq6 Length=4002965 Score = 401 bits (444), Expect = 2e-109 Identities = 229/232 (99%), Gaps = 1/232 (0%) Strand=Plus/Minus Query 303 CTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTA 362 |||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 2113537 CTTCTTTCCC-GCTGATTCTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTA 2113479 Query 363 GATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGG 422 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2113478 GATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGG 2113419 Query 423 CATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAAT 482 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2113418 CATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAAT 2113359 Query 483 TTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACAT 534 ||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 2113358 TTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACTTTGCGTCAACAT 2113307 Score = 111 bits (122), Expect = 5e-22 Identities = 92/108 (85%), Gaps = 6/108 (6%) Strand=Plus/Minus Query 225 GCGCCGAAACGGCTCCCACTT-ATTCT-ACACCTCTCAA-GTCATTTCACAAAGTCGGAC 281 |||||||| |||||||||| ||||| ||||| | | | ||| | ||||| ||| || Sbjct 3664907 GCGCCGAA---GCTCCCACTTTATTCTTACACCCCCCTATGTCTCTACACAATGTCAAAC 3664851 Query 282 TAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGC 329 |||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 3664850 TAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCTGCCAAGC 3664803 >seq1 Length=2257857 Score = 78.8 bits (86), Expect = 3e-12 Identities = 64/75 (85%), Gaps = 2/75 (3%) Strand=Plus/Minus Query 284 GAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTT-CCCTTGGC 342 ||||||||||||| |||||||||||| ||||| |||| | |||||| ||| |||||| Sbjct 1286935 GAGTCAAGCTCAAAAGGGTCTTCTTT-CCCGCAGATTATGACAAGCCTGTTGACCTTGGA 1286877 Query 343 TGTGGTTTCGCTAGA 357 | ||||||||||||| Sbjct 1286876 TATGGTTTCGCTAGA 1286862 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1635199885536