Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20lipolytica_20[genbank_20GCA_5F900087985.1_202016-06-22] 29 sequences; 20,590,669 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq14 398 2e-108 seq29 125 2e-26 seq25 84.2 7e-14 >seq14 Length=2997610 Score = 398 bits (440), Expect = 2e-108 Identities = 228/232 (98%), Gaps = 1/232 (0%) Strand=Plus/Plus Query 303 CTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTA 362 |||||||||| |||||||| ||||||||||||||||||||||||||||||||| |||||| Sbjct 1020102 CTTCTTTCCC-GCTGATTCTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTACATAGTA 1020160 Query 363 GATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGG 422 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1020161 GATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGG 1020220 Query 423 CATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAAT 482 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1020221 CATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAAT 1020280 Query 483 TTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACAT 534 ||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 1020281 TTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACTTTGCGTCAACAT 1020332 Score = 140 bits (154), Expect = 1e-30 Identities = 83/86 (97%), Gaps = 2/86 (2%) Strand=Plus/Plus Query 451 TACTCCCGCCGTTTACCCGCG--CTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACT 508 ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 1020527 TACTCCCGCCGTTTACCCGCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACT 1020586 Query 509 GGGCAGAAATCACATTGCGTCAACAT 534 ||||||||||||| |||||||||||| Sbjct 1020587 GGGCAGAAATCACTTTGCGTCAACAT 1020612 >seq29 Length=2752704 Score = 125 bits (138), Expect = 2e-26 Identities = 91/105 (87%), Gaps = 3/105 (3%) Strand=Plus/Plus Query 225 GCGCCGAAACGGCTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAG 284 |||||||| |||||||||||||||||||| | | ||| | ||||| ||| ||||| Sbjct 326380 GCGCCGAA---GCTCCCACTTATTCTACACCCCCTATGTCTCTACACAATGTCAAACTAG 326436 Query 285 AGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGC 329 ||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 326437 AGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCTGCCAAGC 326481 >seq25 Length=302894 Score = 84.2 bits (92), Expect = 7e-14 Identities = 65/75 (87%), Gaps = 2/75 (3%) Strand=Plus/Plus Query 284 GAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTT-CCCTTGGC 342 ||||||||||||| |||||||||||| ||||| |||| | |||||| ||| |||||| Sbjct 298529 GAGTCAAGCTCAAAAGGGTCTTCTTT-CCCGCAGATTATGACAAGCCTGTTGACCTTGGA 298587 Query 343 TGTGGTTTCGCTAGA 357 ||||||||||||||| Sbjct 298588 TGTGGTTTCGCTAGA 298602 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1635199525792