Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Yarrowia_20lipolytica_20[genbank_20GCA_5F900087985.1_202016-06-22]
29 sequences; 20,590,669 total letters
Query= AAMG01002199.1
Length=543
Score E
Sequences producing significant alignments: (Bits) Value
seq14 398 2e-108
seq29 125 2e-26
seq25 84.2 7e-14
>seq14
Length=2997610
Score = 398 bits (440), Expect = 2e-108
Identities = 228/232 (98%), Gaps = 1/232 (0%)
Strand=Plus/Plus
Query 303 CTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTA 362
|||||||||| |||||||| ||||||||||||||||||||||||||||||||| ||||||
Sbjct 1020102 CTTCTTTCCC-GCTGATTCTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTACATAGTA 1020160
Query 363 GATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGG 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1020161 GATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGG 1020220
Query 423 CATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAAT 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1020221 CATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAAT 1020280
Query 483 TTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACAT 534
||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1020281 TTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACTTTGCGTCAACAT 1020332
Score = 140 bits (154), Expect = 1e-30
Identities = 83/86 (97%), Gaps = 2/86 (2%)
Strand=Plus/Plus
Query 451 TACTCCCGCCGTTTACCCGCG--CTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACT 508
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1020527 TACTCCCGCCGTTTACCCGCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACT 1020586
Query 509 GGGCAGAAATCACATTGCGTCAACAT 534
||||||||||||| ||||||||||||
Sbjct 1020587 GGGCAGAAATCACTTTGCGTCAACAT 1020612
>seq29
Length=2752704
Score = 125 bits (138), Expect = 2e-26
Identities = 91/105 (87%), Gaps = 3/105 (3%)
Strand=Plus/Plus
Query 225 GCGCCGAAACGGCTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAG 284
|||||||| |||||||||||||||||||| | | ||| | ||||| ||| |||||
Sbjct 326380 GCGCCGAA---GCTCCCACTTATTCTACACCCCCTATGTCTCTACACAATGTCAAACTAG 326436
Query 285 AGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGC 329
||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 326437 AGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCTGCCAAGC 326481
>seq25
Length=302894
Score = 84.2 bits (92), Expect = 7e-14
Identities = 65/75 (87%), Gaps = 2/75 (3%)
Strand=Plus/Plus
Query 284 GAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTT-CCCTTGGC 342
||||||||||||| |||||||||||| ||||| |||| | |||||| ||| ||||||
Sbjct 298529 GAGTCAAGCTCAAAAGGGTCTTCTTT-CCCGCAGATTATGACAAGCCTGTTGACCTTGGA 298587
Query 343 TGTGGTTTCGCTAGA 357
|||||||||||||||
Sbjct 298588 TGTGGTTTCGCTAGA 298602
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1635199525792
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |