Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20lipolytica_20[genbank_20GCA_5F900087985.1_202016-06-22] 29 sequences; 20,590,669 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq23 259 4e-64 seq29 226 2e-54 seq13 123 2e-23 >seq23 Length=2267247 Score = 259 bits (286), Expect = 4e-64 Identities = 601/898 (67%), Gaps = 16/898 (2%) Strand=Plus/Plus Query 61042 GAGAATCCTCGTCGTTTCGTATTGTTCCCCATCGAGTATGAGGATATTTGGCGCATGTAC 61101 ||||| | ||| || || || | ||||||||| |||| | || || |||| |||||| Sbjct 1856923 GAGAACCATCGACGGTTTGTGCTCTTCCCCATCCAGTACCACGAAATCTGGCAGATGTAC 1856982 Query 61102 AAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAAT 61161 || ||||| || || || |||||||| | |||||| | ||| | || |||||| | Sbjct 1856983 AAGAAGGCCGAGGCCTCTTTCTGGACAGCTGAGGAGATTGATCTTGGAAAGGACATGGGT 1857042 Query 61162 GACTGGGAGCGTTTA-TCGAG--CGGTGAACAACATTTCATTAAACATGTGTTGGCGTTC 61218 ||||||||| | || | || ||| | ||||| || || | || ||| Sbjct 1857043 GACTGGGAGAACAGACTCAACAACGATGAGCGGTTCTTCATCTCCCACGTTCTCGCATTC 1857102 Query 61219 TTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGTTTCGCGCAGGAGGTG 61278 ||||| || || ||||||||||| || ||||| | | || || ||| | |||||| Sbjct 1857103 TTTGCTGCCTCCGACGGTATCGTTAACGAGAACCTGGTTGAGCGATTCTCCGGCGAGGTG 1857162 Query 61279 CAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCACTCG 61338 || | | ||||| || ||||||||||||||||| |||||||| ||||||| Sbjct 1857163 CAGGCCCCCGAGGCCAAGTGCTTCTACGGCTTCCAGATCATGATGGAGAACATCCACTCC 1857222 Query 61339 GAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGC-----GGGCGGAACGTGAAC 61393 |||| ||| | || ||||| || ||||||| ||| | | ||| ||| | || Sbjct 1857223 GAGACCTACTCGCTGCTGATCGACACATACATCAAGGACCCCAAAGAGCG-AACCT--AC 1857279 Query 61394 GATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCA 61453 ||||||| ||||||||||| || || | ||| || || || |||||| ||| Sbjct 1857280 C--TGTTCAACGCCATCGAGACCATCCCCTGCATCAAGAAAAAGGCCGACTGGGCCCTCA 1857337 Query 61454 ATTGGATCACCAGTACAACGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCG 61513 | |||||| || | | | || ||||| || ||| | | || ||||| | |||| Sbjct 1857338 AGTGGATCTCCGACGAAGAGTCCACCTTTGGAGAGCGACTCATTGCCTTTGCCGCCGTCG 1857397 Query 61514 AGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTA 61573 |||| | || ||| || || || ||| | ||||| ||| | ||||| || || || | Sbjct 1857398 AGGGCATCTTCTTCTCCGGCTCTTTCGCCTCCATCTTCTGGCTCAAGAAGCGAGGTCTCA 1857457 Query 61574 TGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGTGATT 61633 |||| || || |||||| ||| ||| | || || || |||||||| |||| ||| | Sbjct 1857458 TGCCTGGCCTCACCTTCTCCAACGAGCTCATCTCCCGAGACGAGGGTCTGCACACTGACT 1857517 Query 61634 TTGCTGTTTTGCTATTCAAACGCTATCTGGTGAATCGTCCGTCGGAGGAGCGTGTGGGTG 61693 |||| |||| ||| ||| | || | ||| || || || || || ||| | | Sbjct 1857518 TTGCCTGCCTGCTTTTC--TCGC-ACCTTGAGAACCGACCCTCAAAGAAGATTGTTGAGG 1857574 Query 61694 AGATTGTTCGTGAGGCGGTAACTATCGAACAGGAATTTCTGACTGACGCTTTGCCCGTCT 61753 | | || ||||| || ||||| ||||| || || ||||||||| ||||| Sbjct 1857575 ACGTCATTGTCGAGGCTGTTGGCATCGAGCAGGAGTTCCTTACTGACGCTCTGCCCTGTG 1857634 Query 61754 CACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGACCGTC 61813 || | || ||||| || |||| ||||| || || ||||| || ||||||| Sbjct 1857635 GTCTGCTTGGTATGAACGCCAAGCTGATGTGCCAGTACATCGAGTTTGTCGCTGACCGTC 1857694 Query 61814 TGTTGGTCGATTTGGGTATGAAGCGGATCTATAATACGAAAAACCCATTTGATTTCATGG 61873 || | || | | | |||| | | ||||| | | ||||| || || ||||||| Sbjct 1857695 TGCTAGTTGCTCTCGGTAACTCCAAGGTGTATAACTCCACCAACCCCTTCGACTTCATGG 1857754 Query 61874 ACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAACGTGTAGGCGACTATCA 61931 | | || || |||| |||||||| || ||||||||||| || || |||||| || Sbjct 1857755 AGAACATCTCTCTGGCCGGCAAGACCAACTTTTTCGAGAAGCGAGTGTCCGACTACCA 1857812 >seq29 Length=2752704 Score = 226 bits (250), Expect = 2e-54 Identities = 618/941 (66%), Gaps = 18/941 (2%) Strand=Plus/Plus Query 65993 ACAAACTTGGGAAGGGCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTA 66052 ||||| |||| || || | || || |||||||||||||| | ||| ||||||| | Sbjct 57738 ACAAAAGTGGGCAGAGCGATGGAAGCCAGGTTGCAGACAGCGACCTCATCAGGAGAAGAG 57797 Query 66053 TACTCGACAATTTCGGTGCACAGATTACTGCAGCGT--ATGGTGCCCAAATTCTGTTGAT 66110 ||||| ||||| || |||||| ||| | || | || || || | |||| || | Sbjct 57798 TACTCTACAATCTCACAGCACAGGTTA--GAAGACTTAATTGTTCCGAGGTTCTTCTGGT 57855 Query 66111 TACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGG 66170 | ||| || ||||| | |||||||||| |||| | || |||||| ||| ||| Sbjct 57856 TGGACTTTCGGTTGCAGGAGTCCTTGTACAGCATGAAGGGGTTGCCGGACTCGGTCTGGC 57915 Query 66171 ACTCAATGATGGCGTGCCAAAGAGCGCGTGCCTTCACCGTACGTA-----CCGCCCTACC 66225 | || | ||| || ||| || | || | || ||| | ||||| || Sbjct 57916 AGTCGAGAATGTGGTACCACAGCTTCTGGGCAGGGATGGTTCGTCGGCCTCGGCCCT-CC 57974 Query 66226 TTTGCGTTCGTAATGTTCGTAGAGGTGTTCGAAGGATTCACCCCATACTTCGGACAGACA 66285 || ||||| || ||||| || || | || ||||| | || ||| |||| Sbjct 57975 TTC----TCGTACTGCTCGTACAGCTGCTTAAACTCATCACCATAGACGTCGTCAAGACC 58030 Query 66286 TGGACACTTGTGTGGACACATCAGCGACCAATCACCATCCTGTTCTACACGACGCATAAA 66345 || |||| || || |||||||| | ||| ||| | | ||| || || || ||| || Sbjct 58031 GGGGCACTCGTTGGGGCACATCAGGGTCCATTCAGCGTTCTGCTCGACTCGCTCCATGAA 58090 Query 66346 TAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCCGTG 66405 || || || ||||| || || ||| || || || ||||| ||| || | ||||| Sbjct 58091 CAGGTCGGGGATCCACAGAGCCAGGAACAGGTCTCGGGCTCGAATCTCTTCCTTTCCGTG 58150 Query 66406 ATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGC 66465 || || |||| ||| |||||| ||||| ||| | ||||| || || ||||| || || Sbjct 58151 GTTCTTTCGCAGCTCGCAGAACTCGAAGATATCGTCGTGCCAGGGCTCAAGGTACATTGC 58210 Query 66466 GAACGAGCCCATACGTTTGCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGAC 66525 || | || || ||| ||| || || || ||||| || ||| ||||| |||| Sbjct 58211 AAAGGCACCAGGTCGCTTGTTGCCTCCCTGATCAACGTATCGGGCGGTGTTGTTATAGAC 58270 Query 66526 ACGCAACATCGGTACGAGCCCGTTAGATTTGCCATTGGTGCCGTCGATGGGGGATCCTCG 66585 ||||| ||| || |||| ||||| || | || || || || | ||| ||| || Sbjct 58271 ACGCAGCATGGGCACGATACCGTTGGAGGTTCCGTTAGTTCCAGCAATGTAGGAGCCAGT 58330 Query 66586 TGCCCGTATATCGTGAACATTCAGACCAATACCACCGGCCGTCTTCGAGATGGCAGCACA 66645 || || || | ||| | | |||||| ||||| ||||| | ||| || || |||||| Sbjct 58331 AGCTCGGATGTTGTGGATAGACAGACCGATACCGCCGGCAGACTTGGAAATCAGAGCACA 58390 Query 66646 ATCGGCCACTGTCCGGAATATGCCGTCAATGGAGTCACCCTTGATGGTCAGGAGGTAGCA 66705 | || | | |||||||| |||||||| |||| ||| | | ||| | || Sbjct 58391 GGTTTTGAGGGTATCGTAGATGCCGTCGATGGAGTCGTCCTTCATGTTGACAAGGAAACA 58450 Query 66706 TGAACTAAGTTGGGGTTTGGGTGTGGCGGCCGAGAAGAGGGTGGGTGTAGCGTGCGTAAA 66765 || | || || | ||| || |||| | |||| ||||| | |||||| || || Sbjct 58451 CGACGACATCTGAGGCTGGGGAGTTCCGGCGTTGTAGAGAGTGGGGGAAGCGTGAGTGAA 58510 Query 66766 GTAATGGCGAGACATGTAATTGTACGTCTCGATGACAGCATCAATGTTTTCGCCATGAAT 66825 ||| | ||||||| || ||||| ||||| ||| | ||||||| ||||| || || Sbjct 58511 GTACTTCTGAGACATATAGTTGTAGGTCTCAATGGCCCGGGCAATGTTGTCGCCGTGGAT 58570 Query 66826 CCCGAGTGCACATCGCATCAGGAGGTATTGAGGCCGTTCGAC--CAGCCGATCCTTGATA 66883 |||| | |||||| | | | ||| || || ||| | |||| | | |||| Sbjct 58571 ACCGACAGAGACTCGCATGATCATCTGTTGGGGTCGCTCGGCAACAGC--ACCGTTGACT 58628 Query 66884 TGCATTAAGTAGGAGCGTTCCAGGGTCTTGATACCAAAGTA 66924 ||| | ||| | || ||||||||||||| |||||||| Sbjct 58629 CGCAGCAGGTATGCTCGCTCCAGGGTCTTGAAGCCAAAGTA 58669 Score = 95.1 bits (104), Expect = 1e-14 Identities = 316/481 (66%), Gaps = 12/481 (2%) Strand=Plus/Plus Query 65084 GTGAACTGGATCGCATTAGCAGCCGCCTTGGTCCTAAGATAGTACATGCCGGTCTTGAGG 65143 ||||||||||| | |||||| ||| |||| | || |||||||| || |||||||| Sbjct 56841 GTGAACTGGATGGGGGCAGCAGCAGCCATGGTTCGCAGGTAGTACATACCTGTCTTGAGA 56900 Query 65144 CCAGCACGCCAAGCATAGAAATGCATCGATGATAATTTTGCATAAT-TCGGCTCGGCCAC 65202 || ||| | ||||| ||||| || | | | |||| | | || || | Sbjct 56901 CCCTTCTTCCAGCCGTAGAAGTGCATGGAGG-TGAGCTTGCCCATGGTAGGGTCCTTGAT 56959 Query 65203 ATGCATATTCAACGACTGACTCTGATCGATGTAACGACCACGATCTGCAGCCATGTCAAT 65262 || || || | |||||| ||| || ||| | | || || || ||||| ||||| Sbjct 56960 GTGAATGTTGAGGGACTGAGACTGGTCAATGAAGGGGGATCGGTCAGCGGCCATCTCAAT 57019 Query 65263 GATACGACGTCCC-GATATCTCCCAGACGGTCTTGTACAGGCGACGTACCTCAATTGGAA 65321 ||| || | || || |||||||| ||||||||||||||| | || |||| Sbjct 57020 GATTCG-CTTCTGAGAAATCTCCCACACGGTCTTGTACAGGTCCTTGATTTCCTGGGGAA 57078 Query 65322 TCTCCTCAATGTCCTGGACTGAACCACGACGT--GCAATAATGCGATTACGCATCGACTC 65379 | | |||| ||| || || || | || |||| ||| || || ||| | ||| Sbjct 57079 TGTTGGGGATGTTCTGCACGGATCC--GTTGTCAGCAACAATTCGGTTCTTCATGGTCTC 57136 Query 65380 TGACCACAAACCCAAATCGATAAGATG-TTGAACCAAGTGACGA-TTGATGACTTGGAAC 65437 ||||| || | || | || | |||| | || | | |||| | ||||| Sbjct 57137 GTTCCACAGGCCAACCTCAACCAGGTCCTTGAGC--AGCCAGGGGTTGACAATCTGGAAT 57194 Query 65438 TCGCCGGACAGTACACGACGGACATAGATGTTGGACGTGATGGGTTCAAAGGATTCAGTG 65497 || || | || || || || || |||||||| ||| ||| || ||| | ||| || Sbjct 57195 TCACCAGCAAGAACTCGTCGAGAGTAAATGTTGGAAGTGTAGGGCTCGAAGCACTCATTG 57254 Query 65498 TTGCCTAGAATTTGGGCAGTAGATGCAGTTGGCATGGGAGCGACCAACAATGAGTTTCGC 65557 || ||||| |||| ||| || ||||| ||||||||||||||||||| ||||||||| Sbjct 57255 AAACCAAGAATCTGGGAAGTGGAGGCAGTGGGCATGGGAGCGACCAACAGCGAGTTTCGC 57314 Query 65558 A 65558 | Sbjct 57315 A 57315 >seq13 Length=841849 Score = 123 bits (136), Expect = 2e-23 Identities = 216/313 (69%), Gaps = 6/313 (2%) Strand=Plus/Minus Query 66233 TCGTAATGTTCGTAGAGGTGTTCGAAGGATTCACCCCATACTTCGGACAGACATGGACAC 66292 ||||||| ||||| | | ||||| || ||||| || |||| ||||| ||| | Sbjct 422212 TCGTAATCCTCGTACTTGCGGTCGAATTCCTCTCCCCAAACATCGGCCAGACCTGGGGCC 422153 Query 66293 TTGTGTGGACACATCAGCGACCAAT---CACCATCCTGTTCTACACGACGCATAAATAGA 66349 || ||||| | || ||||| | | |||| || | || |||||||| || Sbjct 422152 TTTCTGGGACAGAAAAGAGACCACTTTTCGCCATTCT---CGACTTTGCGCATAAACAGG 422096 Query 66350 TCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCCGTGATTT 66409 ||||| | ||| | |||||||||||| || || ||||| | ||||| || || ||| Sbjct 422095 TCAGGCACCCATAAGGCGTAGAAGAGGTCACGGGCTCGATTTTCCTCGGCACCATGGTTT 422036 Query 66410 TTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAAC 66469 ||||||| | ||||| || || ||||| |||||||| || |||| || | || ||| Sbjct 422035 TTGCGCAGATTCAGGAAATCCAAAATGTCTGCATGCCAGGGCTCCAAATACACTGCAAAC 421976 Query 66470 GAGCCCATACGTTTGCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGC 66529 | || ||||||| || |||||||| ||||| ||||| |||||||| || | Sbjct 421975 GCTCCTGGACGTTTGTTTCCTCCTTGGTCCACGTACCGAGCAGTGTTGTTGAACACTCTG 421916 Query 66530 AACATCGGTACGA 66542 | ||| || |||| Sbjct 421915 AGCATAGGAACGA 421903 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397567859484560