Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20sp._20JCM_2030694_20[genbank_20GCA_5F001600515.1_202016- 03-01] 19 sequences; 21,758,297 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq1 219 1e-54 seq4 176 1e-41 >seq1 Length=4845111 Score = 219 bits (242), Expect = 1e-54 Identities = 146/160 (91%), Gaps = 3/160 (2%) Strand=Plus/Plus Query 345 CATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACG 404 |||||||||| ||| | ||| |||||||||||||||| ||| | ||||||||||||| Sbjct 35 CATGTATTAGTTCTGAAGTTATCACGGTTATCCATGTAATAAAAT--TATCAAATAAACG 92 Query 405 ATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATG 464 ||||||||||||||||||| ||||||||||||||||||| |||| ||||||||||||||| Sbjct 93 ATAACTGATTTAATGAGCCGTTCGCAGTTTCACTGTATA-ATTGTTTATACTTAGACATG 151 Query 465 CATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||||| |||||||||||||||||||||||||||||| Sbjct 152 CATGGCTTAGTCTTTGAGACAAGCATATGACTACTGGCAG 191 >seq4 Length=2864709 Score = 176 bits (194), Expect = 1e-41 Identities = 135/160 (84%), Gaps = 13/160 (8%) Strand=Plus/Plus Query 345 CATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACG 404 |||||||||| ||| | ||| |||||||||||||||| ||| | ||||||||||||| Sbjct 2268756 CATGTATTAGTTCTGAAGTTATCACGGTTATCCATGTAATAAAAT--TATCAAATAAACG 2268813 Query 405 ATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATG 464 ||||||||||||||||||| ||||||||| ||||||||| |||| ||||||||||||||| Sbjct 2268814 ATAACTGATTTAATGAGCCGTTCGCAGTTWCACTGTATA-ATTGTTTATACTTAGACATG 2268872 Query 465 CATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 |||||||||||||||||||||||||| ||| Sbjct 2268873 ----------TCTTTGAGACAAGCATATGACTACTGACAG 2268902 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510399713024