Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20sp._20JCM_2030695_20[genbank_20GCA_5F001602355.1_202016- 03-01] 41 sequences; 21,900,276 total letters Query= NC_032108.1 Length=589068 Score E Sequences producing significant alignments: (Bits) Value seq3 109 2e-18 seq2 89.7 2e-12 >seq3 Length=2943663 Score = 109 bits (120), Expect = 2e-18 Identities = 115/148 (78%), Gaps = 4/148 (3%) Strand=Plus/Minus Query 364430 GTCATACGAGAGGGAATGGAGAGAGGGTTGATGATGATGTCAGGCACCATGCCGTCAGCG 364489 |||||||| |||||||||| | | |||||||||||||| || ||||| || || || || Sbjct 394900 GTCATACGCGAGGGAATGGCGTGGGGGTTGATGATGATATCGGGCACGATACCCTCGGCC 394841 Query 364490 GTAAAGGGCATATCTTCGGGA-GGAACGATGAGACCAATGGTTCCCTTTTGCGCATAGCG 364548 | ||| |||||||| ||| | || ||| | | ||||||||| ||||| || | | || Sbjct 394840 GAAAACGGCATATCCTCGTGTCGGTACG-TCACACCAATGGTACCCTTCTGTCCGTGACG 394782 Query 364549 AGAAGCAAACTTGTCGCCAATGACTGGG 364576 || ||||||||||| ||||| ||||| Sbjct 394781 CGAGGCAAACTTGTCTCCAAT--CTGGG 394756 >seq2 Length=4160336 Score = 89.7 bits (98), Expect = 2e-12 Identities = 237/360 (66%), Gaps = 4/360 (1%) Strand=Plus/Minus Query 12688 CAGAGTAGACACTTGCTTACTGTTGCCTAGAGGTAGTTTCTTGAGAACATCGTAAAAGAA 12747 |||||||| ||| ||||| | | || ||| | || ||| || ||||| ||| Sbjct 1934920 CAGAGTAGGCACCTGCTTGGCGGTACCCAGACCCATGATCATGATGACGTCGTAGTAGAT 1934861 Query 12748 AACTTTCATGCCTAGACACTCTGCTAGGACAGAGACCTGAGAACCAATGTTACCATAACC 12807 || |||||||| | |||| || || ||||| | ||| || ||||| | || || || Sbjct 1934860 GACGTTCATGCCCATGGACTCGGCGAGAACAGACAGCTGGGAGCCAATATGGCCGTATCC 1934801 Query 12808 TACTATACCTAGGGTCTTTCCTCTAACTTCACGGCAACCTTG--AGAAGTCTTGTTCCAA 12865 || || || |||||||| |||| | || | ||| |||| ||| ||||||||| Sbjct 1934800 CACAATTCCCAGGGTCTTGCCTCGGATCTCCCAGCA--CTTGGAAGACACCTTGTTCCAG 1934743 Query 12866 ATGCCTTGGTGTAGTTCTTTGTTTCTATCTCCAACCTGACGAGAAAGATTAATTAGTTGT 12925 | || ||| | || |||||| || || | |||||| || || | || | | Sbjct 1934742 GTTCCGGCGTGCATCTCAATGTTTCGGTCGCCCAGCTGACGCGACAGCATGATGATCTCG 1934683 Query 12926 CCTATGATGAGCTCTGCCACGCTTCTAGTGTTGCAAAAGGGAGAATTAAAGACTGCAATG 12985 | |||| |||||| || || || | |||| | ||||| || || || || ||||| Sbjct 1934682 CAGATGACGAGCTCGGCGACAGATCGGGAGTTGGAGAAGGGCGAGTTGAACACGGCAATA 1934623 Query 12986 CCTAGTTTGGTAGCCATGTCTAGATTAACCTGATCGTAACCAATGCAGAAGCATCCTATG 13045 || |||| || || |||| ||||| | | || ||||||||||| || ||| Sbjct 1934622 CCGTTGTTGGCGGCGTACTCCAGATCGACCTGGTTGGTGCCGATGCAGAAGCAGCCAATG 1934563 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1884885409845613