Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20sp._20JCM_2030696_20[genbank_20GCA_5F001600535.1_202016- 03-01] 39 sequences; 21,750,525 total letters Query= NC_027867.1 Length=651523 Score E Sequences producing significant alignments: (Bits) Value seq3 86.0 3e-11 seq4 84.2 9e-11 >seq3 Length=2682169 Score = 86.0 bits (94), Expect = 3e-11 Identities = 104/142 (73%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 349074 CGTCGAGAATCTCCTTGAGTCTGGGCATGCCCAGGGTCACGTTCTTGGCCGCGACGCCGG 349133 ||| |||||||||||| || | |||| || || ||||||||||||| || || |||| Sbjct 1011048 CGTTGAGAATCTCCTTCAGACGAGGCACACCGAGAGTCACGTTCTTGGACGACACACCGG 1011107 Query 349134 CAAAGTGGAAGGTCTGGAGGGTCAACTGCGTGAGGGGCTCGCCGATGCACTGGCCCGCGA 349193 | | |||||||| | || |||| ||| ||| ||||| || ||| |||| | || | Sbjct 1011108 CGTAATGGAAGGTGTTCAGCGTCATCTGAGTGGCAGGCTCTCCAATGGACTGCGCAGCAA 1011167 Query 349194 GGATGCCTACCATCTCGCCGGG 349215 || || ||||| || ||||| Sbjct 1011168 TGACACCAACCATTTCTCCGGG 1011189 >seq4 Length=2201853 Score = 84.2 bits (92), Expect = 9e-11 Identities = 143/203 (70%), Gaps = 7/203 (3%) Strand=Plus/Plus Query 449006 GTCATGCGCGACGGGTAGGCATGCGGGTTCATGATGATGTCGGGCGTCTCGCCGGCCGCG 449065 ||||| || || ||| | | || |||||||| |||||||| || | | ||| | Sbjct 1116158 GTCATACGAGAGGGGAAACCGTGGGGGTTCATAATGATGTCAGGGCACACTCCGCTATCA 1116217 Query 449066 TTGAAGGGCATGTCCTCGGGGTTGACCACCAGGCCGTTGACGCCCTTCTGGCCGTGGCGG 449125 |||||||||||||||| ||||||| | | ||| || |||||||| ||||| || Sbjct 1116218 CTGAAGGGCATGTCCTCCTGGTTGACAATGATACCGCACACACCCTTCTGTCCGTGACGA 1116277 Query 449126 CTGCAGAACTTGTCCCCCTGCTCGGG--CTTGCGTGTGAAGCGCAGCACGATCTTGATGG 449183 |||||||||| ||| ||||||| | | || ||| || |||| || |||||| | Sbjct 1116278 GACGAGAACTTGTCTCCCAGCTCGGGTCGTCGAGTCTGA--CGAAGCAGGACCTTGAT-G 1116334 Query 449184 AGCGGAAGCCGTCCCTGTTGGTG 449206 || | ||| ||| ||| |||| Sbjct 1116335 AGATGCAGC--TCCTTGTCGGTG 1116355 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2084738132874122