Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20sp._20JCM_2030696_20[genbank_20GCA_5F001600535.1_202016- 03-01] 39 sequences; 21,750,525 total letters Query= NC_032108.1 Length=589068 Score E Sequences producing significant alignments: (Bits) Value seq2 102 3e-16 seq10 91.5 6e-13 >seq2 Length=2949780 Score = 102 bits (112), Expect = 3e-16 Identities = 217/322 (67%), Gaps = 4/322 (1%) Strand=Plus/Plus Query 12726 TCTTGAGAACATCGTAAAAGAAAACTTTCATGCCTAGACACTCTGCTAGGACAGAGACCT 12785 || ||| || ||||| ||| || ||||| || | |||| || || || || | || Sbjct 2269753 TCATGATGACGTCGTAGTAGATGACGTTCATTCCCATGGACTCGGCGAGAACGGACAGCT 2269812 Query 12786 GAGAACCAATGTTACCATAACCTACTATACCTAGGGTCTTTCCTCTAACTTCACGGCAAC 12845 | || ||||||| || || || || ||||| |||||||| |||| | ||| | ||| Sbjct 2269813 GGGAGCCAATGTGGCCGTATCCCACAATACCCAGGGTCTTGCCTCGGATTTCCCAGCA-- 2269870 Query 12846 CTTG--AGAAGTCTTGTTCCAAATGCCTTGGTGTAGTTCTTTGTTTCTATCTCCAACCTG 12903 |||| ||| ||||||||| | || ||| | || |||||| ||||| | ||| Sbjct 2269871 CTTGGAAGAGACCTTGTTCCAGGTTCCGGCGTGCATCTCAATGTTTCGGTCTCCCAGCTG 2269930 Query 12904 ACGAGAAAGATTAATTAGTTGTCCTATGATGAGCTCTGCCACGCTTCTAGTGTTGCAAAA 12963 ||| || || | || | | | |||| |||||| || ||| || | |||| | || Sbjct 2269931 ACGCGACAGCATGATGATCTCACAGATGACGAGCTCGGCGACGGATCGGGAGTTGGAGAA 2269990 Query 12964 GGGAGAATTAAAGACTGCAATGCCTAGTTTGGTAGCCATGTCTAGATTAACCTGATCGTA 13023 ||||| || || || ||||| || |||| ||| || |||| ||||| | | Sbjct 2269991 AGGAGAGTTGAACACGGCAATACCGTTGTTGGCAGCGTACTCCAGATCGACCTGGTTGGT 2270050 Query 13024 ACCAATGCAGAAGCATCCTATG 13045 || ||||||||||| || ||| Sbjct 2270051 GCCGATGCAGAAGCAGCCAATG 2270072 >seq10 Length=888286 Score = 91.5 bits (100), Expect = 6e-13 Identities = 111/148 (75%), Gaps = 4/148 (3%) Strand=Plus/Plus Query 364430 GTCATACGAGAGGGAATGGAGAGAGGGTTGATGATGATGTCAGGCACCATGCCGTCAGCG 364489 |||||||| |||||||||| | | |||||||||||||| || ||||| | || || || Sbjct 502081 GTCATACGCGAGGGAATGGCGTGGGGGTTGATGATGATATCGGGCACGACACCCTCGGCC 502140 Query 364490 GTAAAGGGCATATCTTCG-GGAGGAACGATGAGACCAATGGTTCCCTTTTGCGCATAGCG 364548 | ||| ||||| || ||| | | | | | | ||||||||| ||||| || | | || Sbjct 502141 GAAAACGGCATGTCCTCGTGTCTGTAAG-TCACACCAATGGTACCCTTCTGTCCGTGACG 502199 Query 364549 AGAAGCAAACTTGTCGCCAATGACTGGG 364576 || ||||||||||| ||||| ||||| Sbjct 502200 CGAGGCAAACTTGTCTCCAAT--CTGGG 502225 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1884885458145827