Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: _5BCandida_5D_20auris_20[genbank_20GCA_5F001189475.1_202015-07-30] 99 sequences; 12,498,763 total letters Query= AAMG01002236.1 Length=287 Score E Sequences producing significant alignments: (Bits) Value seq87 154 2e-35 seq34 154 2e-35 seq12 113 7e-23 >seq87 Length=8252 Score = 154 bits (170), Expect = 2e-35 Identities = 153/193 (79%), Gaps = 15/193 (8%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| | |||||| |||||||| |||| ||||||||||||||| Sbjct 41 GTACGAGAGGAACCGTTCA-TTCAGA-TAATTGGTATTTGGCCCTGTCTGACCAGGCACC 98 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | |||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 99 GGGCCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCTA 158 Query 121 GAACGGGGTG---ATT------CTCTCCTGCACATCGTAGTCGGATACGAATAGGCTTCG 171 | ||| | | ||| ||| ||||| | |||| ||||||||||| ||| || Sbjct 159 G-ACGCGACGACAATTTTTGGCCTCGCCTGC---TGCTAGTTGGATACGAATAAGCTACG 214 Query 172 GCCCCGAACCTTA 184 || | ||||| || Sbjct 215 GCGCGGAACCATA 227 Score = 154 bits (170), Expect = 2e-35 Identities = 153/193 (79%), Gaps = 15/193 (8%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| | |||||| |||||||| |||| ||||||||||||||| Sbjct 4016 GTACGAGAGGAACCGTTCA-TTCAGA-TAATTGGTATTTGGCCCTGTCTGACCAGGCACC 4073 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | |||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 4074 GGGCCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCTA 4133 Query 121 GAACGGGGTG---ATT------CTCTCCTGCACATCGTAGTCGGATACGAATAGGCTTCG 171 | ||| | | ||| ||| ||||| | |||| ||||||||||| ||| || Sbjct 4134 G-ACGCGACGACAATTTTTGGCCTCGCCTGC---TGCTAGTTGGATACGAATAAGCTACG 4189 Query 172 GCCCCGAACCTTA 184 || | ||||| || Sbjct 4190 GCGCGGAACCATA 4202 >seq34 Length=339450 Score = 154 bits (170), Expect = 2e-35 Identities = 153/193 (79%), Gaps = 15/193 (8%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| | |||||| |||||||| |||| ||||||||||||||| Sbjct 333113 GTACGAGAGGAACCGTTCA-TTCAGA-TAATTGGTATTTGGCCCTGTCTGACCAGGCACC 333056 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | |||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 333055 GGGCCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCTA 332996 Query 121 GAACGGGGTG---ATT------CTCTCCTGCACATCGTAGTCGGATACGAATAGGCTTCG 171 | ||| | | ||| ||| ||||| | |||| ||||||||||| ||| || Sbjct 332995 G-ACGCGACGACAATTTTTGGCCTCGCCTGC---TGCTAGTTGGATACGAATAAGCTACG 332940 Query 172 GCCCCGAACCTTA 184 || | ||||| || Sbjct 332939 GCGCGGAACCATA 332927 >seq12 Length=267017 Score = 113 bits (124), Expect = 7e-23 Identities = 174/240 (73%), Gaps = 25/240 (10%) Strand=Plus/Plus Query 52 CCAGGCAGTGCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAA 111 ||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 265919 CCAGGCACCGGGCCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAA 265978 Query 112 TCCATGCCAGAACGGGGTG---ATT------CTCTCCTGCACATCGTAGTCGGATACGAA 162 ||||||| || ||| | | ||| ||| ||||| | |||| ||||||||| Sbjct 265979 TCCATGCTAG-ACGCGACGACAATTTTTGGCCTCGCCTGC---TGCTAGTTGGATACGAA 266034 Query 163 TAGGCTTCGGCCCCGAACCTTAGCAGGCCGGCAACG-GGCGTCCCGCGGAAGCGCGGGGC 221 || ||| |||| | ||||| || ||| | | | | ||| || | ||| | ||| Sbjct 266035 TAAGCTACGGCGCGGAACCATACAAGGTGGTGATTGCTGGGTCACG-GAAAG---GTGGC 266090 Query 222 GCTCAGCTGG---CGGATTGCAATTTCACCATGCGCAGGGATAAATCCTTTGCAGACGAC 278 | | ||| || |||||||| ||| || | || ||||| |||||||||| ||||| Sbjct 266091 ---CTGGTGGCCACGAATTGCAATGTCA-CACGGGCGGGGATGGATCCTTTGCATACGAC 266146 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 819199214336