Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nilaparvata_20lugens_20yeast- like_20symbiont_20[genbank_20GCA_5F000758425.1_202014-09-26] 578 sequences; 26,809,569 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq69 271 6e-68 seq24 125 6e-24 >seq69 Length=174959 Score = 271 bits (300), Expect = 6e-68 Identities = 629/935 (67%), Gaps = 21/935 (2%) Strand=Plus/Plus Query 66002 GGAAGGGCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACA 66061 || ||||| || || || || ||||||||||| | || ||||| || | ||||| || Sbjct 172805 GGCAGGGCTAGCGAGGCCAGATTGCAGACAGCAACTTCATCAGGTGCAGAGTACTCAACG 172864 Query 66062 ATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGA 66121 ||||| ||||| || || | || |||||||||| |||| |||||| |||||||| Sbjct 172865 ATTTCCGTGCAAAGGTTCGAACTCCGAATGGTGCCCAGGTTCTTTTGATTGCTCTTGCGG 172924 Query 66122 TTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGATG 66181 ||||| ||||||||||| |||| |||| |||| || || || || | ||| Sbjct 172925 TTGCAATGATCCTTGTACAGCATGAACGGGTTGCCCGTTTCCGTCTGTACTTCCAGGATA 172984 Query 66182 GCGTGCCAAAGAGCGCGTGCCTTCACCGTACGTACCGCC-CTACCTTTGCGTTCGTAATG 66240 | | ||| || | ||| |||||| | | | ||| | || | ||| ||||| | Sbjct 172985 GAATACCACAGCTTCTGAGCCCGCACCGT-CTTGCGGCCACGGCCCTCGCGCTCGTACTT 173043 Query 66241 TTCGTAGAGGTGTTCGAAGGATTCACC-CCATACT--TCGGACAGACATGGACACTTGTG 66297 |||||| || || || |||| | || || |||| ||||| ||||| | || Sbjct 173044 TTCGTACAGAGCCTCAAA---TTCATCGCCGTAGCAGTCGGCCAGACCGGGACATTCGTT 173100 Query 66298 TGGACACATCAGCGACCAATCACCATCCTGTTCTACACGACGC---ATAAATAGATCAGG 66354 || ||||| |||| ||||||||| | | |||| |||| ||| || || || || || Sbjct 173101 GGGGCACATGAGCGTCCAATCACCGT--TTTTCTCCACG-CGCTTCATGAACAGGTCGGG 173157 Query 66355 TATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCCGTGATTTTTGCG 66414 ||||| ||||| ||||||| ||||| ||||| |||||| |||| || || ||||| Sbjct 173158 AATCCACAGGGCTAAGAAGAGGTCGCGAGCTCGAACCTCCTCCTTGCCATGGTTCTTGCG 173217 Query 66415 CAAGTCGAGGAACTCAAAGATGTCGGCATGCCAT-GGTTCCAGGTAGATGGCGAACGAGC 66473 ||| || || |||||||||| || ||||||||| || |||||||| ||||| || | | Sbjct 173218 CAAATCCAGAAACTCAAAGACATCAGCATGCCATTGGCTCCAGGTATATGGCAAAGGCAC 173277 Query 66474 CCATACGTTTGCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGCAACA 66533 | || ||| ||| || |||||||||||||| || ||||| |||||||| | || Sbjct 173278 CTGGCCGCTTGTTGCCGCCCTGGTCGACGTAGCGGGCCGTGTTGTTAAAGACACGAAGCA 173337 Query 66534 TCGGTACGAGCCCGTTAGATTTGCCATTGGTGCCGTCGATGGGGGATCCTCGTGCCCGTA 66593 | || | || ||||| || | || ||||||||| | ||| || || || || | Sbjct 173338 TGGGAATGACACCGTTCGAGGTCCCGTTGGTGCCGGCAATGCAAGAGCCGGTAGCACGGA 173397 Query 66594 TATCGTGAACATTCAGACCAATACCACCGGCCGTCTTCGAG---ATGGCAGCACAATCGG 66650 | || || || || || || ||||||||| |||| ||| ||||| |||| | Sbjct 173398 TCCGATGCACGTTGAGCCCGATGCCACCGGCCATCTTAGAGATCATGGC-GCACGTCTTG 173456 Query 66651 CCACTGTCCGGAATATGCCGTCAATGGAGTCACCCTTGATGGTCAGGAGGTAGCATGAAC 66710 |||| | | ||||| || ||| |||| |||| ||| | |||| |||| || Sbjct 173457 AGCGTGTC--GTAAATGCCCTCGATGCTGTCATCCTTCATGTCAACGAGGAAGCACGAGG 173514 Query 66711 TAAGTTGGGGTTTGGGTGTGGCGGCCGAGAAGAGGGTGGGTGTAGCGTGCGTAAAGTAAT 66770 |||||| | || ||| | || ||| || | || | || || || ||| | Sbjct 173515 ACAGTTGGCACTGAGGCGTGCCAGCGTTGAACAGCGCCGGCGACGCATGGGTGAAGAGCT 173574 Query 66771 GGCGAGACATGTAATTGTACGTCTCGATGACAGCATCAATGTTTTCGCCATGAATCCCGA 66830 || |||||| |||||||| |||| ||| || || || ||||| || || | Sbjct 173575 TGCTGGACATGAGGTTGTACGTTTCGAGGACTCGGTCGATATTGTCGCCCCATATACCCA 173634 Query 66831 GTGCACATCGCATCAGGAGGTATTGAGGCCGTTCGACCAGCCGATCCTTGATATGCATTA 66890 ||| ||||| | | || ||| || || || || | | | | || | || | Sbjct 173635 CGGCAACGCGCATGATCATGTGTTGGGGGCGCTCAACGATCTTGCCGTCGAGCTTCAGCA 173694 Query 66891 AGTAGGAGCGTTCCAGGGTCTTGATACCAAAGTAC 66925 || || || ||||| ||||||| ||||| ||| Sbjct 173695 GATAAGAACGCTCCAGAGTCTTGAAGCCAAAATAC 173729 >seq24 Length=328731 Score = 125 bits (138), Expect = 6e-24 Identities = 234/336 (70%), Gaps = 11/336 (3%) Strand=Plus/Plus Query 61087 ATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTG 61146 ||||||| |||||||| ||||| || || || || ||||| | ||||| | ||| | Sbjct 173173 ATTTGGCAAATGTACAAGAAGGCAGAGGCCTCATTTTGGACAGCCGAGGAAATAGATCTC 173232 Query 61147 TCCAAAGACATGAATGACTGGGA-----GCGTTTATCGAGCGGTGAACAACATTTCATTA 61201 ||||| ||| || |||||||| | || | || || | ||| | |||| | Sbjct 173233 TCCAAGGACTTGCATGACTGGAACAACCGCCTGAAT-GAT-GACGAAAAGTATTTTGTGT 173290 Query 61202 AACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAAC 61261 || | |||| || || ||||| |||||||| ||||||||||| || || | || | Sbjct 173291 CCCACATCCTGGCCTTTTTCGCCGCCTCGGACGGCATCGTCAATGAAAACTTGGTTGAGC 173350 Query 61262 GTTTC-GCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCC 61320 | ||| ||| ||||| || | | ||||| ||||| |||||||| || |||||| Sbjct 173351 GGTTCAGCG-GCGAGGTTCAGATCCCCGAGGCCCGTTGCTTCTACGGATTTCAGATTATG 173409 Query 61321 ATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGG 61380 |||||||| ||||||| |||| ||| | || |||||||| || |||| |||| Sbjct 173410 ATGGAGAACATCCACTCCGAGACATACTCCCTCCTGATCGATACCTATATCAAGGAGAAT 173469 Query 61381 GCGGAACGTGAACGAT-TGTTCAATGCCATCGAGAC 61415 || | || || | || | |||||||| || ||||| Sbjct 173470 GCTCAGCG-GACCTATCTCTTCAATGCTATTGAGAC 173504 Score = 120 bits (132), Expect = 2e-22 Identities = 299/452 (66%), Gaps = 3/452 (1%) Strand=Plus/Plus Query 61480 TTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTT 61539 |||| | |||| ||| |||| ||||| | |||||||||| | || || ||||| | ||| Sbjct 173635 TTTGCTCAACGCTTGGTGGCCTTTGCCGCGGTCGAGGGTATCTTCTTTAGTGGTGCCTTT 173694 Query 61540 GCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAG 61599 ||| | ||||| ||| | ||||| ||||| || ||||| || ||||||| ||| || Sbjct 173695 GCCTCCATCTTCTGGCTCAAGAAGCGTGGCCTCATGCCTGGCTTGACCTTTTCCAACGAA 173754 Query 61600 TTGATATCACGCGACGAGGGCATGCATTGTGATTTTGCTGTTTTGCTATTCAAACGCTAT 61659 | || || || || || || |||| || ||||| | | || || ||| | Sbjct 173755 CTCATTTCGCGAGATGAAGGTTTGCACACGGACTTTGCATGTCTCCTG--CACTCGC-AC 173811 Query 61660 CTGGTGAATCGTCCGTCGGAGGAGCGTGTGGGTGAGATTGTTCGTGAGGCGGTAACTATC 61719 || || || | | || | ||| || | || || || | ||| Sbjct 173812 CTCAAAAACCGGGCCAGCAAACAGGTCATCTATGACATCATCACCGATGCCGTCGCCATC 173871 Query 61720 GAACAGGAATTTCTGACTGACGCTTTGCCCGTCTCACTCATCGGCATGAATTGTGGACTA 61779 ||||| |||||||| || || || ||||| | || | | |||||||| | | Sbjct 173872 GAACAAGAATTTCTAACCGAAGCCCTGCCCTGCGCATTACTTGGCATGAACGCTACCTTG 173931 Query 61780 ATGTCGCAGTATATTGAATTTGTTGCCGACCGTCTGTTGGTCGATTTGGGTATGAAGCGG 61839 ||| ||||||||| || || ||||||||||| || | |||| |||| | | | Sbjct 173932 ATGAAGCAGTATATCGAGTTCGTTGCCGACCGCCTTCTCGTCGCACTGGGCAACGAAAAG 173991 Query 61840 ATCTATAATACGAAAAACCCATTTGATTTCATGGACATGATTTCGCTGGATGGCAAGACG 61899 || || | || ||| || |||||||||||||| | || ||||| | ||||| || Sbjct 173992 ATGTACAGGTCGTCAAATCCCTTTGATTTCATGGAAAACATATCGCTAGGGGGCAAAACC 174051 Query 61900 AATTTTTTCGAGAAACGTGTAGGCGACTATCA 61931 || |||||||| || || || || |||||||| Sbjct 174052 AACTTTTTCGAAAAGCGGGTTGGTGACTATCA 174083 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397565199381920