Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pneumocystis_20jirovecii_20[genbank_20GCA_5F000333975.2_202012-12- 19] 358 sequences; 8,179,983 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq71 369 7e-100 >seq71 Length=3573 Score = 369 bits (408), Expect = 7e-100 Identities = 265/300 (88%), Gaps = 4/300 (1%) Strand=Plus/Plus Query 21 TTCCTTCTGGGGATCCGC-ATGCCCTTCACTGGGTGTGCCGGGGAGCCAGGAC-TTTTAC 78 |||||||||| ||| |||||||||| ||||||| ||| | ||||| | |||||| Sbjct 716 TTCCTTCTGGATTACCGGTATGCCCTTCATTGGGTGTATCGGATAACCAGGGCCTTTTAC 775 Query 79 TTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATACATTAGCATGGAATAAT 138 ||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 776 TTTGAGAAAATTAGAGTGTTCAAAGCAGGCATTTGCTCGAATACATTAGCATGGAATAAT 835 Query 139 AGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGG 198 ||||| || || ||||||||||||||||||||||||||| | | |||||||||||||| Sbjct 836 GAAATAGAACATGTGGTTCTATTTTGTTGGTTTCTAGGACCACTG-AATGATTAATAGGG 894 Query 199 ATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACT 258 | ||| ||||| | ||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 895 ACAGTTGGGGGCATTAGTATTCAATTGTCAGAGGTGAAATTCTTAGATTTATTGAAGACT 954 Query 259 AACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTAGGGG 318 ||||||||||||||| || |||||||||||||||||||||| |||||||||||||||| Sbjct 955 AACTACTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCA-AGAACGAAAGTTAGGGG 1013 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 915196723584