Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pneumocystis_20jirovecii_20[genbank_20GCA_5F000333975.2_202012-12- 19] 358 sequences; 8,179,983 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq71 527 3e-147 >seq71 Length=3573 Score = 527 bits (584), Expect = 3e-147 Identities = 525/668 (79%), Gaps = 28/668 (4%) Strand=Plus/Plus Query 34 TTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAG 93 ||| | |||||||||||||||||| |||||||| ||||||| |||||||||| ||||||| Sbjct 2577 TTCAAAGAGTCGAGTTGTTTGGGATTGCAGCTCAAAATGGGTGGTAAATTTCATCTAAAG 2636 Query 94 CTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACT 153 |||||||| || |||||||||||||| |||||||||||||||||||||||||||| ||| Sbjct 2637 CTAAATATGAGCGAGAGACCGATAGCGAACAAGTAGAGTGATCGAAAGATGAAAAGAACT 2696 Query 154 TTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCTTGCAACCAGACT 213 ||| ||||||||||||| || |||||||||||||||||||||||||||| | ||||| Sbjct 2697 TTGAAAAGAGAGTTAAATAGTGCGTGAAATTGTTGAAAGGGAAGCGCTTGTGATCAGACA 2756 Query 214 TGCCCGCAGTTGCTCAACCGGCCCCTCGGCCGGTGCACTCTTCTGCG----GTCAGGCCA 269 |||| | | || ||||| ||| | || | || | ||||||| Sbjct 2757 TGCCTTTATAGGAGATGCCATTGTTTCGGCATTGGCAGTATTATCCGAATTGGCAGGCCA 2816 Query 270 GCATCAGCTCGGGCGGTCGGATAAAGGCCCCGG--GAATGT-GGCCCCCTTCGGGGGGTG 326 ||||| | | | ||||||| | || ||| || ||| | |||||| |||| Sbjct 2817 GCATCGGTTTCAGTTACTGGATAAAA---CTGGAAGAAGGTAGGCTCTCTTCGGAGGGTT 2873 Query 327 TTATAGC--CCGG--GGTGGAATGC---GGCCCGCCTGG--ACTGAGGTCCGCGCTCCGG 377 || |||| || | | || | || || ||| || | | |||| | Sbjct 2874 TTTTAGCTTCCAGTAGCTGCAGTGACCGGGACCGGAAGGGAAATTGGGTCTTTGAAGACC 2933 Query 378 CTAGGATGCTGGC-GTAATGGTTGTAAGCGGCCCGTCTTGGAACACGGACCAAGGAGTCT 436 || |||| |||| | |||||| |||||| ||||||||| ||||||||||||||||||| Sbjct 2934 TTATGATGTTGGCAGAAATGGTCCTAAGCGACCCGTCTTGAAACACGGACCAAGGAGTCT 2993 Query 437 AACATCTATGCGAGTGTTTGGGTGTCAAACCCGTGCGCGTAATGAAAGTGAACGGA-GGT 495 || ||||||||||||||||||||| |||||| | ||| |||||||||||| | ||| Sbjct 2994 AATATCTATGCGAGTGTTTGGGTGGAAAACCCATACGCAGAATGAAAGTGAATTAAAGGT 3053 Query 496 GGGAACCCGTGAGGGTGCACCATCGACCGATCCTGATGTCTTCGGATGGATTTGAGTAAG 555 |||| || | ||||||||||||||||| | || ||| || ||| | ||||||| Sbjct 3054 GGGAGCCTTTTTGGGTGCACCATCGACCGGTTCT-----CTTATGA-GGACT-GAGTAAG 3106 Query 556 AGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGG 615 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 3107 AGCATAGCTATTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGG 3166 Query 616 AAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTAT 675 |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| || Sbjct 3167 AAACTCTGGTGGAGGCTCGCAGCGGTTCTGACGTGCAAATCGATCGTCAAATTTGGGCAT 3226 Query 676 AGGGGCGA 683 |||||||| Sbjct 3227 AGGGGCGA 3234 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079992320900