Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pneumocystis_20jirovecii_20[genbank_20GCA_5F000333975.2_202012-12- 19] 358 sequences; 8,179,983 total letters Query= AAMG01000811.1 Length=502 Score E Sequences producing significant alignments: (Bits) Value seq356 96.9 1e-17 >seq356 Length=4666 Score = 96.9 bits (106), Expect = 1e-17 Identities = 227/335 (68%), Gaps = 26/335 (8%) Strand=Plus/Plus Query 156 ACAGGTGATGCATGGTTGTCGTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAAC 215 ||||||| ||||||| |||| | || |||||| |||| ||||| |||| | ||| ||| Sbjct 1182 ACAGGTGTTGCATGGCTGTCTTTAGTTCGTGTTGTGAAATGTTAGGTTTATTCCGATAAC 1241 Query 216 GAGCGCAACCCTTAAGCTTAGTTGCCATCATTAAGTTGGGCACTCTAAGTTGACTGCCGG 275 || || || |||| |||| || ||| || | | || || || || Sbjct 1242 GAACGTAAACCTTGTCCTTAATT------ATT---TTAAGGA----AA--TGTCTATCGA 1286 Query 276 TGACAAACCGGAGGAAGGTGGGGACGACGTCAAATCATCATGCCCCTTATGATTTGGGCT 335 | | | || ||| | ||| || | ||| || ||||| ||||||||| |||||| Sbjct 1287 TATTATA---GATGAA--TTAGGATGAAGACAAGTCCTCATGACCCTTATGAAGTGGGCT 1341 Query 336 ACACACGTGCTACAATGGACAATACAAAGGGCAGCGAAACCGCGAGGTCA-AGCAAATCC 394 ||| ||||||| ||| ||||| ||| || | | || ||| ||| ||||| Sbjct 1342 ACAGACGTGCTGCAAAATTTTCTACAATGGGATGCAATGATG-GAAGTCGGAGCTAATCC 1400 Query 395 CATAAAG--TTGTTCTCAGTTCGGATTGTAGTCTGCAACTCGACTATATGAAGCTGGAAT 452 | |||| ||||| ||| ||||| | ||| |||||| || | ||||| |||||| Sbjct 1401 CCTAAAAGATTGTTT--AGTCCGGATAAGTGCCTGGAACTCGGCTCTTTGAAGTTGGAAT 1458 Query 453 CGCTAGTAATCGTAGATCAGCATGCTACGGTGAAT 487 |||||||||||| |||| |||| ||||||||| Sbjct 1459 TGCTAGTAATCGTCTATCATCATGAGACGGTGAAT 1493 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1503994615680