Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pneumocystis_20jirovecii_20[genbank_20GCA_5F000333975.2_202012-12- 19] 358 sequences; 8,179,983 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq71 360 3e-97 >seq71 Length=3573 Score = 360 bits (398), Expect = 3e-97 Identities = 234/257 (91%), Gaps = 0/257 (0%) Strand=Plus/Minus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||| | |||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1515 ACTTGCTGGCTCTGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 1456 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCC 121 ||||||||||||||||||||||||||||| | ||||| ||||||||||||||||| || Sbjct 1455 CCTGTTATTGCCTCAAACTTCCATTGGCTTCATGCCAACAGTCCCTCTAAGAAGCCTGCG 1396 Query 122 ACCAACCATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAA 181 | || | | || || |||||||||| |||||||||||||||||||||||| |||||| Sbjct 1395 ATCAGCAAAAGCTAATCTGGCTATTTAGTAGGTTAAGGTCTCGTTCGTTATCGCAATTAA 1336 Query 182 CCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAA 241 ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1335 GCAGACAAATCACTTCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAA 1276 Query 242 AGAGCTATCAATCTGTC 258 |||||| |||||||||| Sbjct 1275 AGAGCTCTCAATCTGTC 1259 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796797236598