Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pneumocystis_20jirovecii_20[genbank_20GCA_5F000333975.2_202012-12- 19] 358 sequences; 8,179,983 total letters Query= AAMG01001291.1 Length=420 Score E Sequences producing significant alignments: (Bits) Value seq357 87.8 4e-15 >seq357 Length=8428 Score = 87.8 bits (96), Expect = 4e-15 Identities = 132/185 (71%), Gaps = 16/185 (9%) Strand=Plus/Minus Query 199 TAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAAAGTGG-GCTCCCACT 257 ||| | ||||||||||||| ||||||||||| |||| | ||| |||| ||| Sbjct 3008 TAACTTGCTGACCCATTATGCAAAAGGTACGTCGTCAGTC-----TTTGGACCTCCGACT 2954 Query 258 GCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCTTTTCGCCT 317 |||| || | || |||| ||||| ||||||| | | |||||||| || Sbjct 2953 GCTTATAAGGTTATTAATTCAAGATCTGTTTCACT----TAT-----ATTCTTTTCAACT 2903 Query 318 TTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGAGGATGGT 377 ||||||||||||||| |||||||||| | | | | ||||||||||| |||||| || Sbjct 2902 TTCCCTCACGGTACT-CTTCACTATCGCTTAATATATTATATTTAGCCTTAGAGGATAGT 2844 Query 378 CCCCC 382 |||| Sbjct 2843 TCCCC 2839 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1241595555072