Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pneumocystis_20jirovecii_20[genbank_20GCA_5F000333975.2_202012-12- 19] 358 sequences; 8,179,983 total letters Query= AAMG01001884.1 Length=191 Score E Sequences producing significant alignments: (Bits) Value seq71 219 4e-55 >seq71 Length=3573 Score = 219 bits (242), Expect = 4e-55 Identities = 164/190 (86%), Gaps = 3/190 (2%) Strand=Plus/Plus Query 3 AACCAGGAC-TTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGAATAC 61 ||||||| | ||||||||||| |||||||||| ||||||||||||| ||||||||||||| Sbjct 760 AACCAGGGCCTTTTACTTTGAGAAAATTAGAGTGTTCAAAGCAGGCATTTGCTCGAATAC 819 Query 62 ATTACCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCC 121 |||| ||||||||||| ||||| || || ||||||||||||| |||||||||||| | Sbjct 820 ATTAGCATGGAATAATGAAATAGAACATGTGGTTCTATTTTGTTGGTTTCTAGGAC--CA 877 Query 122 CGTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCT 181 | |||||| |||| ||| ||| ||||| | ||||||||||||||| |||||||||||| Sbjct 878 CTGAATGATTAATAGGGACAGTTGGGGGCATTAGTATTCAATTGTCAGAGGTGAAATTCT 937 Query 182 TGGATTTATT 191 | |||||||| Sbjct 938 TAGATTTATT 947 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511998224320