Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pneumocystis_20jirovecii_20[genbank_20GCA_5F000333975.2_202012-12- 19] 358 sequences; 8,179,983 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq71 425 1e-116 >seq71 Length=3573 Score = 425 bits (470), Expect = 1e-116 Identities = 281/310 (91%), Gaps = 1/310 (0%) Strand=Plus/Plus Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCCCGCTTTGGCGGGTCGCCGGCTTCTTAG 79 || |||||||||||||| |||||||||||| ||||| || | |||| |||||||||| Sbjct 1350 GAACGAGACCTTAACCTACTAAATAGCCAGATTAGCTTTTGCTGATCGCAGGCTTCTTAG 1409 Query 80 AGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTT 138 ||||||| | ||| | ||||| |||||||||||||||||||||||||||||||||||||| Sbjct 1410 AGGGACTGTTGGCATGAAGCCAATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTT 1469 Query 139 AGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGGCC 198 |||||||||||||||||||||||||||||||||||||||| | ||||||| ||||| || Sbjct 1470 AGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAGCAAGTTCATTTCCTTGACC 1529 Query 199 GGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATT 258 | ||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 1530 GAAAGGTTTGGGTAATCTTGTGAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATT 1589 Query 259 GCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCT 318 ||||||||||||||||| |||||||||||| ||||||||| |||||||||| |||||| Sbjct 1590 GCTCTTCAACGAGGAATTCCTAGTAAGCGCAAGTCATCAGCTTGCGTTGATTATGTCCCT 1649 Query 319 GCCCTTTGTA 328 |||||||||| Sbjct 1650 GCCCTTTGTA 1659 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 947196609024