Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pneumocystis_20jirovecii_20[genbank_20GCA_5F000333975.2_202012-12- 19] 358 sequences; 8,179,983 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq71 798 0.0 >seq71 Length=3573 Score = 798 bits (884), Expect = 0.0 Identities = 483/508 (95%), Gaps = 4/508 (1%) Strand=Plus/Minus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 544 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATTGTTATTTATTGTCACTACCT 485 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 484 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 425 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180 |||||||||||||||||||||| ||||||| |||||||||||||||| || ||||||||| Sbjct 424 TCTCAGGCTCCCTCTCCGGAATAGAACCCTTATTCCCCGTTACCCGTCGAAACCATGGTA 365 Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCT 240 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 364 GGCCTCTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCAGCA 305 Query 241 CAAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGG--AGCCCCGAAGGGCGTTG 298 ||||||||||||||||||||||||||||||||| ||||| | ||||||||||||| ||| Sbjct 304 CAAGGCCATGCGATTCGTTAAGTTATTATGAATGACCAAAGTAAGCCCCGAAGGGCATTG 245 Query 299 GTTTTTTATCTAATAAATACACCCCTTCC--GAAGTCGGGGTTTTTAGCATGTATTAGCT 356 ||||||||||||||||||||| ||||||| |||||||| ||||||||||||||||||| Sbjct 244 GTTTTTTATCTAATAAATACATCCCTTCCATAAAGTCGGGATTTTTAGCATGTATTAGCT 185 Query 357 CTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTA 416 |||||||||||||||||||||| |||||||||||||||||||||||| ||||||||| || Sbjct 184 CTAGAATTACCACGGTTATCCAAGTAGTAAGGTACTATCAAATAAACTATAACTGATATA 125 Query 417 ATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATC 476 ||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| Sbjct 124 ATGAGCCATTCGCAGTTTCACCGTATAAATTGCTTATACTTAGACATGCATGGCTTAATC 65 Query 477 TTTGAGACAAGCATATGACTACTGGCAG 504 |||||||||||||||||||||||||||| Sbjct 64 TTTGAGACAAGCATATGACTACTGGCAG 37 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510394592768