Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pneumocystis_20jirovecii_20[genbank_20GCA_5F000333975.2_202012-12- 19] 358 sequences; 8,179,983 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq195 118 8e-22 >seq195 Length=28285 Score = 118 bits (130), Expect = 8e-22 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 66340 CATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAAT 66399 |||||||| ||||||||||| | | | || || ||||| | |||||| || || | Sbjct 14034 CATAAATAAGTCAGGTATCCATAAGCCATAAAAAAGATCTCTTGCTCGAATTTCTTCTTT 14093 Query 66400 GCCGTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTA 66459 ||||||||||| || | || | ||| ||||| || || |||||||||||||| | || Sbjct 14094 ACCGTGATTTTTACGAAGATCCAAGAATTCAAATATATCTGCATGCCATGGTTCTATATA 14153 Query 66460 GATGGCGAACGAGCCCATACGTTTGCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTT 66519 || || || | ||| ||| ||| ||||||||||| || || ||||| |||||| Sbjct 14154 AATAGCAAAGGCGCCAGGACGCTTGTTCCCACCTTGGTCAACATATCGAGCAGTATTGTT 14213 Query 66520 GAAGACACGCAACATCGGTACGAGCCCGTTAGATTTGCCATTGGTGCC 66567 ||| || | | ||| || | | || |||||| | ||||| || || Sbjct 14214 GAATACCCTGAGCATAGGAATAATACCATTAGATGTACCATTAGTTCC 14261 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397566265361120