Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protomyces_20lactucaedebilis_20[genbank_20GCA_5F002105105.1_202017- 04-20] 44 sequences; 12,928,838 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq30 439 5e-121 seq19 439 5e-121 >seq30 Length=10296 Score = 439 bits (486), Expect = 5e-121 Identities = 285/310 (92%), Gaps = 2/310 (1%) Strand=Plus/Minus Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCCCGCTTTGGCGGGTCGCCGGCTTCTTAG 79 || ||||||||||||||||||||||||| | | ||||| || | |||| |||||||||| Sbjct 1920 GAACGAGACCTTAACCTGCTAAATAGCCCGACTAGCTTTTGCTGCTCGCTGGCTTCTTAG 1861 Query 80 AGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTT 138 ||||||||| ||| | ||||| |||||||||||||||||||||||||||||||||||||| Sbjct 1860 AGGGACTATTGGCATAAAGCCAATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTT 1801 Query 139 AGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGGCC 198 ||||||||||||||||||||||||||||||||| |||||| ||||||||| |||||||| Sbjct 1800 AGATGTTCTGGGCCGCACGCGCGCTACACTGACGGAGCCAGCGAGTTCATT-CCTTGGCC 1742 Query 199 GGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATT 258 ||||||||||||||||||||| |||||| |||||| |||||||||||||||||||||||| Sbjct 1741 GGAAGGTCTGGGTAATCTTGTGAAACTCCGTCGTGATGGGGATAGAGCATTGCAATTATT 1682 Query 259 GCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCT 318 ||||||||||||||||| |||||||||||| ||||||||| ||||||||||||||||| Sbjct 1681 GCTCTTCAACGAGGAATTCCTAGTAAGCGCAAGTCATCAGCTTGCGTTGATTACGTCCCT 1622 Query 319 GCCCTTTGTA 328 |||||||||| Sbjct 1621 GCCCTTTGTA 1612 >seq19 Length=179986 Score = 439 bits (486), Expect = 5e-121 Identities = 285/310 (92%), Gaps = 2/310 (1%) Strand=Plus/Minus Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCCCGCTTTGGCGGGTCGCCGGCTTCTTAG 79 || ||||||||||||||||||||||||| | | ||||| || | |||| |||||||||| Sbjct 174020 GAACGAGACCTTAACCTGCTAAATAGCCCGACTAGCTTTTGCTGCTCGCTGGCTTCTTAG 173961 Query 80 AGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTT 138 ||||||||| ||| | ||||| |||||||||||||||||||||||||||||||||||||| Sbjct 173960 AGGGACTATTGGCATAAAGCCAATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTT 173901 Query 139 AGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGGCC 198 ||||||||||||||||||||||||||||||||| |||||| ||||||||| |||||||| Sbjct 173900 AGATGTTCTGGGCCGCACGCGCGCTACACTGACGGAGCCAGCGAGTTCATT-CCTTGGCC 173842 Query 199 GGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATT 258 ||||||||||||||||||||| |||||| |||||| |||||||||||||||||||||||| Sbjct 173841 GGAAGGTCTGGGTAATCTTGTGAAACTCCGTCGTGATGGGGATAGAGCATTGCAATTATT 173782 Query 259 GCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCT 318 ||||||||||||||||| |||||||||||| ||||||||| ||||||||||||||||| Sbjct 173781 GCTCTTCAACGAGGAATTCCTAGTAAGCGCAAGTCATCAGCTTGCGTTGATTACGTCCCT 173722 Query 319 GCCCTTTGTA 328 |||||||||| Sbjct 173721 GCCCTTTGTA 173712 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 947199583232