Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protomyces_20lactucaedebilis_20[genbank_20GCA_5F002105105.1_202017- 04-20] 44 sequences; 12,928,838 total letters Query= AAMG01002236.1 Length=287 Score E Sequences producing significant alignments: (Bits) Value seq36 224 2e-56 seq30 224 2e-56 seq19 224 2e-56 >seq36 Length=3393 Score = 224 bits (248), Expect = 2e-56 Identities = 229/286 (80%), Gaps = 12/286 (4%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| | |||||| ||||||||||||||||||||||||| ||||| | Sbjct 1168 GTACGAGAGGAACCGTCGT-TTCAGA-TAATTGGTTTTTGCGGCTGTCTGACAAGGCATT 1111 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 1110 GCCGCGAAGCTACCATCTGTTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 1051 Query 121 GAACGGGGTGAT-TCTCTCCT-GCACATCGTAGTCGGATACGAATAG-GCTTCGGCCCCG 177 ||||||| |||| || ||| ||||||| ||| || ||| |||||| |||| | || | Sbjct 1050 GAACGGGTTGATGCCTACCCTCGCACATCTTAGACGAATATGAATAGAGCTTTGCTCCTG 991 Query 178 AACCTTAGCAGGCCGGCAACGGGCG-TCCCGCGGAA--GCGCGGGGCGCTC-AGCTGGCG 233 | | || || | || ||| | || |||||| || ||| | || | || || Sbjct 990 TATCGTATCATGGGTTCACCGGCTGCTCGGGCGGAAAGGCCAGGGCAGTTCGAACT--CG 933 Query 234 GATTGCAATTT-CACCATGCGCAGGGATAAATCCTTTGCAGACGAC 278 || ||||||| | |||||| ||||| ||||||||||||||||| Sbjct 932 TATGGCAATTTGAAATATGCGCGGGGATGAATCCTTTGCAGACGAC 887 >seq30 Length=10296 Score = 224 bits (248), Expect = 2e-56 Identities = 229/286 (80%), Gaps = 12/286 (4%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| | |||||| ||||||||||||||||||||||||| ||||| | Sbjct 7149 GTACGAGAGGAACCGTCGT-TTCAGA-TAATTGGTTTTTGCGGCTGTCTGACAAGGCATT 7092 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 7091 GCCGCGAAGCTACCATCTGTTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 7032 Query 121 GAACGGGGTGAT-TCTCTCCT-GCACATCGTAGTCGGATACGAATAG-GCTTCGGCCCCG 177 ||||||| |||| || ||| ||||||| ||| || ||| |||||| |||| | || | Sbjct 7031 GAACGGGTTGATGCCTACCCTCGCACATCTTAGACGAATATGAATAGAGCTTTGCTCCTG 6972 Query 178 AACCTTAGCAGGCCGGCAACGGGCG-TCCCGCGGAA--GCGCGGGGCGCTC-AGCTGGCG 233 | | || || | || ||| | || |||||| || ||| | || | || || Sbjct 6971 TATCGTATCATGGGTTCACCGGCTGCTCGGGCGGAAAGGCCAGGGCAGTTCGAACT--CG 6914 Query 234 GATTGCAATTT-CACCATGCGCAGGGATAAATCCTTTGCAGACGAC 278 || ||||||| | |||||| ||||| ||||||||||||||||| Sbjct 6913 TATGGCAATTTGAAATATGCGCGGGGATGAATCCTTTGCAGACGAC 6868 >seq19 Length=179986 Score = 224 bits (248), Expect = 2e-56 Identities = 229/286 (80%), Gaps = 12/286 (4%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| | |||||| ||||||||||||||||||||||||| ||||| | Sbjct 168953 GTACGAGAGGAACCGTCGT-TTCAGA-TAATTGGTTTTTGCGGCTGTCTGACAAGGCATT 168896 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 168895 GCCGCGAAGCTACCATCTGTTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 168836 Query 121 GAACGGGGTGAT-TCTCTCCT-GCACATCGTAGTCGGATACGAATAG-GCTTCGGCCCCG 177 ||||||| |||| || ||| ||||||| ||| || ||| |||||| |||| | || | Sbjct 168835 GAACGGGTTGATGCCTACCCTCGCACATCTTAGACGAATATGAATAGAGCTTTGCTCCTG 168776 Query 178 AACCTTAGCAGGCCGGCAACGGGCG-TCCCGCGGAA--GCGCGGGGCGCTC-AGCTGGCG 233 | | || || | || ||| | || |||||| || ||| | || | || || Sbjct 168775 TATCGTATCATGGGTTCACCGGCTGCTCGGGCGGAAAGGCCAGGGCAGTTCGAACT--CG 168718 Query 234 GATTGCAATTT-CACCATGCGCAGGGATAAATCCTTTGCAGACGAC 278 || ||||||| | |||||| ||||| ||||||||||||||||| Sbjct 168717 TATGGCAATTTGAAATATGCGCGGGGATGAATCCTTTGCAGACGAC 168672 Score = 224 bits (248), Expect = 2e-56 Identities = 229/286 (80%), Gaps = 12/286 (4%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| | |||||| ||||||||||||||||||||||||| ||||| | Sbjct 179249 GTACGAGAGGAACCGTCGT-TTCAGA-TAATTGGTTTTTGCGGCTGTCTGACAAGGCATT 179192 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 179191 GCCGCGAAGCTACCATCTGTTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 179132 Query 121 GAACGGGGTGAT-TCTCTCCT-GCACATCGTAGTCGGATACGAATAG-GCTTCGGCCCCG 177 ||||||| |||| || ||| ||||||| ||| || ||| |||||| |||| | || | Sbjct 179131 GAACGGGTTGATGCCTACCCTCGCACATCTTAGACGAATATGAATAGAGCTTTGCTCCTG 179072 Query 178 AACCTTAGCAGGCCGGCAACGGGCG-TCCCGCGGAA--GCGCGGGGCGCTC-AGCTGGCG 233 | | || || | || ||| | || |||||| || ||| | || | || || Sbjct 179071 TATCGTATCATGGGTTCACCGGCTGCTCGGGCGGAAAGGCCAGGGCAGTTCGAACT--CG 179014 Query 234 GATTGCAATTT-CACCATGCGCAGGGATAAATCCTTTGCAGACGAC 278 || ||||||| | |||||| ||||| ||||||||||||||||| Sbjct 179013 TATGGCAATTTGAAATATGCGCGGGGATGAATCCTTTGCAGACGAC 178968 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 819199650816