Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protomyces_20lactucaedebilis_20[genbank_20GCA_5F002105105.1_202017- 04-20] 44 sequences; 12,928,838 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq43 410 1e-109 seq23 260 1e-64 seq42 100 2e-16 >seq43 Length=605699 Score = 410 bits (454), Expect = 1e-109 Identities = 1236/1871 (66%), Gaps = 82/1871 (4%) Strand=Plus/Minus Query 65105 GCCGCCTTGGTCCTAAGATAGTACATGCCGGTCTTGAGGCCAGCACGCCAAGCATAGAAA 65164 || ||| |||| | || ||||||||||| |||||||| || |||| |||| || Sbjct 34964 GCAGCCATGGTACGCAGGTAGTACATGCCCGTCTTGAGTCCCTTCTTCCAACCATAAAAG 34905 Query 65165 TGCATCGATGATAATTTTGCATAAT-TCGGCTCGGCCACATGCATATTCAACGACTGACT 65223 |||||||||| ||||||| | ||| ||||| | | ||||| || | || || Sbjct 34904 TGCATCGATG-TAATTTTACCGAATGTCGGCGCCTTGAGATGCAAGTTGAGGGATTGCGA 34846 Query 65224 CTGATCGATGTAACGACCACGATCTGCAGCCATGTCAATGATACGACGTCCCGATAT--C 65281 |||||| || | |||||| || |||||||| || || | | || | || | | Sbjct 34845 CTGATCAATAAAGGCACCACGGTCAGCAGCCATATCGATCA--CCACTTTTTGAGAGAGC 34788 Query 65282 TCCCAGACGGTCTTGTACAGGCGA--CGTACCTCAATTGGAATCTCCTCAATGTCCTGGA 65339 ||||| || |||||||| ||| ||| || | || || | |||| || | Sbjct 34787 TCCCATACAGTCTTGTAGAGGGCTTTCGTCTCTGCA--GGGATGTTTGGGATGTTTTGCA 34730 Query 65340 CTGAACCACGACGTGCAATAATGCGATTACGCATCGACTCTGACCACAAACCCAAATCGA 65399 | || |||| | ||||| |||||||| ||| ||||||||| | |||| || | Sbjct 34729 CAGAGCCACCATCGGCAATGATGCGATTCTTCATATTCTCTGACCAGAGTCCCATCTCAA 34670 Query 65400 TAAGATG-TTGA---ACCAAGTGACGATTGATGACTTGGAACTCGCCGGACAGTACACGA 65455 |||| |||| |||||| | || | || |||||||| |||| || |||||| Sbjct 34669 CGAGATCCTTGAGCAACCAAGGG----TTCACCACCTGGAACTCACCGGCAAGGACACGA 34614 Query 65456 CGGACATAGATGTTGGACGTGATGGGTTCAAAGGATTCAGTGTTGCCTAGAATTTGGGCA 65515 || || |||||| |||| ||| |||||| ||||| || || ||||| || | Sbjct 34613 CGCGAGTAAATGTTGCTCGTGTAGGGCTCAAAGCATTCATTGAAACCCAGAATCTGTGAC 34554 Query 65516 GTAGATGCAGTTGGCATGGGAGCGACCAACAATGAGTTTCGCAATCCGTTCATTTCAATG 65575 || || ||||| ||||| || || ||||| ||||| || | || | | || |||| Sbjct 34553 GTGGACGCAGTGGGCATCGGTGCACACAACAGGGAGTTGCGGATACCATGCTTTGCAATC 34494 Query 65576 T----TGTGACGCAATTCGTCCCAGTTCCACATC--GGTTTATCGTCGACATCCACGGGC 65629 | | ||| || ||| |||||| ||| | | ||| | || ||||| | Sbjct 34493 TGCTCTTTGA-GCG--TCG-CCCAGTCCCAGAGCTTGGTGGGT-GT-GACATTC------ 34446 Query 65630 CACATATCCTGTTGCAGGGTTCCGATACTGGCCGGTGAACCGAGGAAACTATCGTACACT 65689 |||| || | |||| ||| | ||| ||||| || | | || ||| Sbjct 34445 CACAAGTCATACTGCAAAAGTCCCTGAGAGGCAGGTGAGCCCTCGTAGGTAGAGTATGGA 34386 Query 65690 CCCTCCTCCTTGGCAAGTTGACAGCTGGTCTCGAGTGCGGCAAAATAAATGGTCTCGAAA 65749 ||||| || | || || | ||| || || || || | || |||||||| || Sbjct 34385 CCCTCTTCTTGTGCCAGCTCACACGAGGCTTCAAGAGCACCGTGGTAGATGGTCTCAAAG 34326 Query 65750 ATGCGTCGATTAAGTTCACGTGCCTCATCGCTCTCGTACGGCATACCCATCAG-GACAAA 65808 || | || || || ||||| ||| | |||| | | || | ||| Sbjct 34325 ATTTGGATGTTCAGCTCCTTGGCCTCGGGCGAGTCGAATGGCAG---CTTAAGTGCCAAG 34269 Query 65809 AGTG--TCGGCCAGACCTTGAACTCCAATACCGATGGGACGATGACGCAAATTGGAACGT 65866 | | ||||| |||||||| || |||| ||||||||| || |||||| |||||||| Sbjct 34268 AAGGCATCGGCGAGACCTTGCACACCAAGACCGATGGGTCGGTGACGCTTGTTGGAACG- 34210 Query 65867 CTC-GCCTCAGGTACAGGGTAGTAATTGATATCGATAATGCGATTCAAATTGCGTGTCAC 65925 ||| || ||| || |||||||| |||| ||||| || ||||| ||||| | || Sbjct 34209 CTCAGCTTCAATGACTGGGTAGTAGTTGACGTCGATGATCTTGTTCAAGTTGCGAGCAAC 34150 Query 65926 CACATGCACGATA-CGTCGCAATTGTTCGAAATCAAAA-----TGTTTAGGACGATCGGG 65979 || | ||| | ||| | || || ||| || | ||||| | || | Sbjct 34149 AACCTTGGCGACATCGTGGAGCTTCTT-GAAGTCGTAGACGGGTGTTTCTG-----CGCG 34096 Query 65980 AGTGCCGGACACCACAAACTTGGGAAGGGCAAGAGATGCGAGGTTGCAGACAGCTATCTC 66039 || || | || |||| | ||||| || ||||| ||||||||||| | ||| Sbjct 34095 CATGTCG------ATGAAGGTGGGCAAGGCAATGGAGGCGAGATTGCAGACAGCCACCTC 34042 Query 66040 GTCAGGAGCGGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAA 66099 || || || | ||||||||||| ||||| |||| || ||||| ||||| || | Sbjct 34041 ATCGGGTGCCGAGTACTCGACAATCTCGGTACACAAGTTGCTGCACTTGATGGTACCGAG 33982 Query 66100 ATTCTGTTGATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGT 66159 |||| || || |||||| ||||| || |||||||||| |||| | ||| |||| || Sbjct 33981 GTTCTTCTGGTTCGACTTGCGGTTGCAGGCGTCCTTGTACAGCATGAAGGGATTGCCCGT 33922 Query 66160 CTCAACTTGGGACTCAATGATGGCGTGCCAAAGAGCGCGTGCCTTCACCGTACGTACCGC 66219 |||| ||| | ||| | || |||| ||| || ||||||| | || | | | Sbjct 33921 CTCAGTTTGCGCCTCGAGAATAGCGTACCACAGCTTCTGTGCCTTGATGGT-CTTCATGA 33863 Query 66220 CCTACCTTTGCGT-TCGTAATGTTCGTAGAGGTGTTCGAAGGATTCACC-CCATACT--T 66275 ||| | | | ||||| | ||| | | ||| || |||| | |||||| | Sbjct 33862 CCTTGCCGGCCTTCTCGTACTTGGTGTACAAGGCTTCAAA---TTCATCGCCATACACCT 33806 Query 66276 CGGACAGACATGGACACTTGTGTGGACACATCAGCGACCAATCACCATCCTGTTCTACAC 66335 || || || ||||| | || || ||||| |||||||| || |||| || || |||| Sbjct 33805 CGTGCATACCAGGACATTCGTTGGGGCACATGAGCGACCACTCGCCATTCTCCTCCACAC 33746 Query 66336 GACGCATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCT 66395 | ||| || |||||||| |||||||| || ||||| | |||||||| || ||| | Sbjct 33745 GCTTCATGAAGAGATCAGGGATCCAGAGAGCATAGAACAAGTCGCGTGCGCGGACCTCTT 33686 Query 66396 CAATGCCGTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCA 66455 | ||||||| || ||||||||||| ||||| |||||||||| || |||||||| || | Sbjct 33685 CCTTGCCGTGGTTCTTGCGCAAGTCAAGGAAGCCAAAGATGTCTGCGTGCCATGGCTCAA 33626 Query 66456 GGTAGATGGCGAACGAGCCCATACGTTTGCCGCCACCTTGGTCGACGTAGCGAGCGACAT 66515 ||| || || || | || ||| ||| ||||||||||||||| || | || | Sbjct 33625 TGTAAATAGCAAAGGCACCTGGACGCTTGTTGCCACCTTGGTCGACATACCTGGCAGTGT 33566 Query 66516 TGTTGAAGACACGCAACATCGGTACGAGCCCGTTAGATTTGCCATTGGTGCCGTCGATGG 66575 ||||||||||||||| ||| || | || ||||| ||| | ||||| || ||| | ||| Sbjct 33565 TGTTGAAGACACGCAGCATGGGGATGATGCCGTTGGATGTACCATTTGTACCGGCAATGT 33506 Query 66576 GGGATCCTCGTGCCCGTATATCGTGAACATTCAGACCAATACCACCGGCCGTCTTCGAG- 66634 ||| ||| || || ||| ||||| |||||||| |||||||| ||||| ||| Sbjct 33505 AACTGCCTGTTGCACGGATGCAGTGGACATTGAGACCAATGCCACCGGCTGTCTTAGAGA 33446 Query 66635 --ATGGCAGCACAATCGGCCACTGTCCGGAATATGCCGTCAATGGAGTCACCCTTGATGG 66692 |||||| ||| | | | ||| | | ||||| || || |||||| |||| || | Sbjct 33445 TCATGGCA-CACGTTTTG--AGTGTGTCGTAGATGCCATCGATCGAGTCATCCTTCATTG 33389 Query 66693 TCAGGAGGTAGCATGAACTAAGTTGGGGTTTGGGTGTGGCGGCCGAGAAGAGGGTGGGTG 66752 | | ||| |||| || ||||| || ||||| || |||| ||||||||| || | Sbjct 33388 TGACAAGGAAGCAAGACGAGAGTTGTGGGTTGGGCGTACCGGCGTTGAAGAGGGTAGGCG 33329 Query 66753 TAGCGTGCGTAAAGTAATGGCGAGACATGTAATTGTACGTCTCGATGACAGCATCAATGT 66812 ||||| || |||| | | ||||||| ||||| ||||| ||| | ||||||| Sbjct 33328 ATGCGTGTGTGAAGTGCTTGGAAGACATGAGGTTGTATGTCTCAATGGCCTTTTCAATGT 33269 Query 66813 TTTCGCCATGAATCCCGAGTGC-ACATCGCATCAGGAGGTATTGAGGCCGTTC--GACCA 66869 || |||||||| || | || ||| ||||| | | || || || | || | || Sbjct 33268 CATCACCATGAATGCCAACAGCGACA-CGCATGATCATGTGCTGCGGTCTCTCTGCAACA 33210 Query 66870 GCCGATCCTTGATATGCATTAAGTAGGAGCGTTCCAGGGTCTTGATACCAAAGTACGAGT 66929 || | | | |||| ||| || || || || || || ||||||| ||||||||| || Sbjct 33209 GC--ACCATCGATACGCAACAAATAAGAACGCTCGAGCGTCTTGAAGCCAAAGTACTGGT 33152 Query 66930 AATTGAAATCG 66940 | ||||||| Sbjct 33151 ACGCGAAATCG 33141 >seq23 Length=690853 Score = 260 bits (288), Expect = 1e-64 Identities = 597/888 (67%), Gaps = 18/888 (2%) Strand=Plus/Plus Query 61054 CGTTTCGTATTGTTCCCCATCGAGTATGAGGATATTTGGCGCATGTACAAAAAGGCGGAA 61113 || ||||| | ||||||||| ||||| | || ||||||| |||||||||||||| ||| Sbjct 88354 CGCTTCGTCCTCTTCCCCATCAAGTATCACGAGATTTGGCAAATGTACAAAAAGGCAGAA 88413 Query 61114 GCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAATGACTGGGAGC-- 61171 || ||||||||||| | |||||| | || | ||||| ||| || | ||||||||| Sbjct 88414 GCATCCTTCTGGACCGCCGAGGAGATTGACCTCTCCAAGGACCTGCACGACTGGGAGAAC 88473 Query 61172 --GTTTATCGAGCGGTGAACAACATTTCATTAAACATGTGTTGGCGTTCTTTGCCGCTTC 61229 | | | ||| || |||| ||||| || || | || ||||||||||| Sbjct 88474 AAGCTCAACGA-CGACGAACGCTTCTTCATCTCCCACGTCCTCGCTTTCTTTGCCGCCAG 88532 Query 61230 GGACGGTATCGTCAATGAGAATTTATTGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGA 61289 || || || |||||||| ||||| | || |||||| | | || || ||||| | || Sbjct 88533 TGATGGCATTGTCAATGAAAATTTGCTCGAGCGTTTCTCCAACGAAGTCCAAGTACCAGA 88592 Query 61290 GGCGCGTTGTTTCTACGGCTTCCAGAT--TGCCATGGAGAATGTCCACTCGGAGATGTAC 61347 ||| || || ||||| ||||||||||| || | ||| || ||||||| |||| ||| Sbjct 88593 GGCACGATGCTTCTATGGCTTCCAGATCATGGC--GGAAAACATCCACTCAGAGACCTAC 88650 Query 61348 AGTGTTCTCATCGATACGTACATCAGGGAGCGGGCGGAACGTGAACGATTGTTCAATGCC 61407 | ||||| ||||| ||||||| ||| | || |||| | | | ||| |||| Sbjct 88651 TCCCTCCTCATTGATACATACATCAAGGAACAAGCTCAACGGCAGCACCTCTTCGATGCA 88710 Query 61408 ATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAATTGGATCACCAGT 61467 |||||||| || ||| | |||| ||||| || ||||| | ||||| ||| Sbjct 88711 ATCGAGACAATCCCGTGCATCAAGCAAAAAGCAGACTGGGCACTGCGCTGGAT-TGCAG- 88768 Query 61468 ACAAC--GGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGGGTGTATTTT 61525 || || | |||| |||| || | |||| ||||| | |||||||| | |||| Sbjct 88769 ACGACGAGTCTACCTTTGCACTGCGTCTTGTGGCTTTTGCTGCTGTCGAGGGAATCTTTT 88828 Query 61526 TCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCGGTCTGA 61585 || ||| ||||| ||| | ||||||||| | ||||| ||||| || ||||| || || | Sbjct 88829 TCTCTGGCTCGTTCGCCTCCATCTTTTGGCTCAAGAAGCGTGGTCTCATGCCGGGACTCA 88888 Query 61586 CCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGTGATTTTGCTGTTTTGC 61645 |||| ||||||||| | || || || |||||||| | || ||||| || | | Sbjct 88889 CCTTTAGCAATGAGCTCATCTCTCGTGACGAGGGTCTCCACACAGATTTCGCCTGTCTCT 88948 Query 61646 TATTCAAACGCTATCTGGTGAATCGTCCGTCGGAGGAGCGTGTGGGTGAGATTGTTCGTG 61705 | || | | || || ||| || || || | | || || || || || Sbjct 88949 TGTTTAGTCACT---TGAAGAACAAGCCTTCAAAGCAACAGGTACAAGACATCATTACTG 89005 Query 61706 AGGCGGTAACTATCGAACAGGAATTTCTGACTGACGCTTTGCCCGTCTCACTCATCGGCA 61765 | || || || || |||| || || || ||| | | || | | | | || | Sbjct 89006 AAGCTGTTGAGATTGAGCAGGCTTTCCTCACAGACTCCCTACCATGCCCCTTATTGGGTA 89065 Query 61766 TGAATTGTGGACTAATGTCGC-AGTATATTGAATTTGTTGCCGACCGTCTGTTGGTCGAT 61824 | ||| || ||| ||| |||| ||||||||||| || || || || | ||| | Sbjct 89066 TCAATGCAAAGCTCATG-CGCGAGTACATTGAATTTGTCGCTGATCGACTCCTCGTCTCT 89124 Query 61825 TTGGGTATGAAGCGGATCTATAATACGAAAAACCCATTTGATTTCATGGACATGATTTCG 61884 | || | || | ||||| | || | || |||||||| || ||||| | ||||| Sbjct 89125 CTTGGCAACAAAAAGTTCTATCACACCAGCAATCCATTTGACTTTATGGAGAACATTTCA 89184 Query 61885 CTGGATGGCAAGACGAATTTTTTCGAGAAACGTGTAGGCGACTATCAA 61932 || | ||||||||| || || || ||||| ||||| || ||||| ||| Sbjct 89185 CTCGCTGGCAAGACCAACTTCTTTGAGAAGCGTGTCGGTGACTACCAA 89232 >seq42 Length=614792 Score = 100 bits (110), Expect = 2e-16 Identities = 133/182 (73%), Gaps = 2/182 (1%) Strand=Plus/Minus Query 9147 TTGGGCCCCATTTACGGTTTCCAGTGGCGACATTTCGGTGCTCGGTACATCGATTGTCAT 9206 |||||||| | || || || || ||||| ||||||||||| ||||| ||||| || Sbjct 241636 TTGGGCCCAGTGTATGGCTTTCAATGGCGGCATTTCGGTGCAGAGTACAAGGATTGCCAC 241577 Query 9207 ACGGACTATACGGGCCAAGGTGTGGATCAGTTGGCGCAATGTATGCATCAGATCCAATAT 9266 || |||||||| |||||||| |||||||| | || |||| || | |||| ||| | Sbjct 241576 ACAGACTATACAGGCCAAGGCGTGGATCAACTCGCTGAATGCATTCGCAAGAT-CAAAAC 241518 Query 9267 GAG-CCGAGTAGTCGACGCATGATTATGACTGCCTGGAATCCGAACGATTTGGACAAGAT 9325 ||| || | ||| ||||| || || |||| |||||||| ||| ||| |||||| Sbjct 241517 GAGCCCTTATGATCGTCGCATCATCTTGTCTGCTTGGAATCCAGCAGATCTGGGCAAGAT 241458 Query 9326 GG 9327 || Sbjct 241457 GG 241456 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397567786804160