Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizosaccharomyces_20pombe_20[genbank_20GCA_5F000002945.2_202007- 11-09] 4 sequences; 12,591,251 total letters Query= AAMG01001884.1 Length=191 Score E Sequences producing significant alignments: (Bits) Value seq3 264 1e-68 >seq3 Length=2452883 Score = 264 bits (292), Expect = 1e-68 Identities = 176/194 (91%), Gaps = 4/194 (2%) Strand=Plus/Minus Query 1 GGAACCAGGACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCC---TTTGCTCGA 57 ||||||||||||||||| ||||||||||||||| ||||||||||||| ||||||||| Sbjct 11517 GGAACCAGGACTTTTACCTTGAAAAAATTAGAGTGTTCAAAGCAGGCAAGTTTTGCTCGA 11458 Query 58 ATACATTACCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGAC 117 |||||||| |||||||||||| ||||||||||| ||||||||||||| |||||||||||| Sbjct 11457 ATACATTAGCATGGAATAATAAAATAGGACGTGTGGTTCTATTTTGTTGGTTTCTAGGAC 11398 Query 118 CGCCCGTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAA 177 || |||||||||| |||| ||||||||||||| | |||||||||||||| |||||||| Sbjct 11397 CG-CCGTAATGATTAATAGGGATAGTCGGGGGCATTCGTATTCAATTGTCAGAGGTGAAA 11339 Query 178 TTCTTGGATTTATT 191 |||||||||||||| Sbjct 11338 TTCTTGGATTTATT 11325 Score = 264 bits (292), Expect = 1e-68 Identities = 176/194 (91%), Gaps = 4/194 (2%) Strand=Plus/Minus Query 1 GGAACCAGGACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCC---TTTGCTCGA 57 ||||||||||||||||| ||||||||||||||| ||||||||||||| ||||||||| Sbjct 22387 GGAACCAGGACTTTTACCTTGAAAAAATTAGAGTGTTCAAAGCAGGCAAGTTTTGCTCGA 22328 Query 58 ATACATTACCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGAC 117 |||||||| |||||||||||| ||||||||||| ||||||||||||| |||||||||||| Sbjct 22327 ATACATTAGCATGGAATAATAAAATAGGACGTGTGGTTCTATTTTGTTGGTTTCTAGGAC 22268 Query 118 CGCCCGTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAA 177 || |||||||||| |||| ||||||||||||| | |||||||||||||| |||||||| Sbjct 22267 CG-CCGTAATGATTAATAGGGATAGTCGGGGGCATTCGTATTCAATTGTCAGAGGTGAAA 22209 Query 178 TTCTTGGATTTATT 191 |||||||||||||| Sbjct 22208 TTCTTGGATTTATT 22195 Score = 264 bits (292), Expect = 1e-68 Identities = 176/194 (91%), Gaps = 4/194 (2%) Strand=Plus/Plus Query 1 GGAACCAGGACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCC---TTTGCTCGA 57 ||||||||||||||||| ||||||||||||||| ||||||||||||| ||||||||| Sbjct 2441737 GGAACCAGGACTTTTACCTTGAAAAAATTAGAGTGTTCAAAGCAGGCAAGTTTTGCTCGA 2441796 Query 58 ATACATTACCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGAC 117 |||||||| |||||||||||| ||||||||||| ||||||||||||| |||||||||||| Sbjct 2441797 ATACATTAGCATGGAATAATAAAATAGGACGTGTGGTTCTATTTTGTTGGTTTCTAGGAC 2441856 Query 118 CGCCCGTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAA 177 || |||||||||| |||| ||||||||||||| | |||||||||||||| |||||||| Sbjct 2441857 CG-CCGTAATGATTAATAGGGATAGTCGGGGGCATTCGTATTCAATTGTCAGAGGTGAAA 2441915 Query 178 TTCTTGGATTTATT 191 |||||||||||||| Sbjct 2441916 TTCTTGGATTTATT 2441929 Score = 264 bits (292), Expect = 1e-68 Identities = 176/194 (91%), Gaps = 4/194 (2%) Strand=Plus/Plus Query 1 GGAACCAGGACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCC---TTTGCTCGA 57 ||||||||||||||||| ||||||||||||||| ||||||||||||| ||||||||| Sbjct 2452626 GGAACCAGGACTTTTACCTTGAAAAAATTAGAGTGTTCAAAGCAGGCAAGTTTTGCTCGA 2452685 Query 58 ATACATTACCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGAC 117 |||||||| |||||||||||| ||||||||||| ||||||||||||| |||||||||||| Sbjct 2452686 ATACATTAGCATGGAATAATAAAATAGGACGTGTGGTTCTATTTTGTTGGTTTCTAGGAC 2452745 Query 118 CGCCCGTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAA 177 || |||||||||| |||| ||||||||||||| | |||||||||||||| |||||||| Sbjct 2452746 CG-CCGTAATGATTAATAGGGATAGTCGGGGGCATTCGTATTCAATTGTCAGAGGTGAAA 2452804 Query 178 TTCTTGGATTTATT 191 |||||||||||||| Sbjct 2452805 TTCTTGGATTTATT 2452818 Score = 260 bits (288), Expect = 1e-67 Identities = 175/194 (90%), Gaps = 4/194 (2%) Strand=Plus/Minus Query 1 GGAACCAGGACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCC---TTTGCTCGA 57 ||||||||||||||||| ||||||||||||||| ||||||||||||| ||||||||| Sbjct 647 GGAACCAGGACTTTTACCTTGAAAAAATTAGAGTGTTCAAAGCAGGCAAGTTTTGCTCGA 588 Query 58 ATACATTACCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGAC 117 |||||||| |||||||||||| ||||||||||| ||||||||| ||| |||||||||||| Sbjct 587 ATACATTAGCATGGAATAATAAAATAGGACGTGTGGTTCTATTNTGTTGGTTTCTAGGAC 528 Query 118 CGCCCGTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAA 177 || |||||||||| |||| ||||||||||||| | |||||||||||||| |||||||| Sbjct 527 CG-CCGTAATGATTAATAGGGATAGTCGGGGGCATTCGTATTCAATTGTCAGAGGTGAAA 469 Query 178 TTCTTGGATTTATT 191 |||||||||||||| Sbjct 468 TTCTTGGATTTATT 455 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511999980160