Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizosaccharomyces_20pombe_20[genbank_20GCA_5F000002945.2_202007- 11-09] 4 sequences; 12,591,251 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq3 731 0.0 >seq3 Length=2452883 Score = 731 bits (810), Expect = 0.0 Identities = 492/544 (90%), Gaps = 8/544 (1%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||||| ||||| ||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 6749 CTTTTATTCTACTCGAGATTTCTGTTCTCGATGAGTCCCCCTTAGGACACCTGCGTTATC 6808 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 6809 TTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACGCGGATC 6868 Query 127 GGCCCGCGAAGGACCTT-AACGCCAGAAAATGGTCGGTGAAGACCAGTTCCGCTTCATTG 185 | ||||||| | ||| ||||| |||| |||| | || ||| ||||||||||||| Sbjct 6869 AGTTCGCGAAGAAACTTTAACGCTAGAATATGGGAAATAAATCCCAATTCCGCTTCATTG 6928 Query 186 ATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCG----CCGAAACGG-CTCC 240 |||||||||| ||||||||| |||||||||||||||| ||| ||||||| |||| Sbjct 6929 ATTAAGTAAAGAAACGATAAAGGTAGTGGTATTTCACCGGCGTATGCCGAAACATACTCC 6988 Query 241 CACTTATTCTACA-CCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAG 299 ||||||| ||||| ||||| | ||| ||||||| ||| |||||||||||||||||||| Sbjct 6989 CACTTATCCTACACCCTCT-ATGTCTCTTCACAATGTCAAACTAGAGTCAAGCTCAACAG 7047 Query 300 GGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATA 359 ||||||||||||||||||||| ||| |||||||||| |||||||||||||||||||| Sbjct 7048 GGTCTTCTTTCCCCGCTGATTTTGCCTGGCCCGTTCCCCAGGCTGTGGTTTCGCTAGATA 7107 Query 360 GTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACG 419 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 7108 GTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAGTTAGATGACG 7167 Query 420 AGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTG 479 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 7168 AGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTG 7227 Query 480 AATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATCACTT 539 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 7228 AATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACACCACTT 7287 Query 540 TCTG 543 |||| Sbjct 7288 TCTG 7291 Score = 731 bits (810), Expect = 0.0 Identities = 492/544 (90%), Gaps = 8/544 (1%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||||| ||||| ||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 17619 CTTTTATTCTACTCGAGATTTCTGTTCTCGATGAGTCCCCCTTAGGACACCTGCGTTATC 17678 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 17679 TTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACGCGGATC 17738 Query 127 GGCCCGCGAAGGACCTT-AACGCCAGAAAATGGTCGGTGAAGACCAGTTCCGCTTCATTG 185 | ||||||| | ||| ||||| |||| |||| | || ||| ||||||||||||| Sbjct 17739 AGTTCGCGAAGAAACTTTAACGCTAGAATATGGGAAATAAATCCCAATTCCGCTTCATTG 17798 Query 186 ATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCG----CCGAAACGG-CTCC 240 |||||||||| ||||||||| |||||||||||||||| ||| ||||||| |||| Sbjct 17799 ATTAAGTAAAGAAACGATAAAGGTAGTGGTATTTCACCGGCGTATGCCGAAACATACTCC 17858 Query 241 CACTTATTCTACA-CCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAG 299 ||||||| ||||| ||||| | ||| ||||||| ||| |||||||||||||||||||| Sbjct 17859 CACTTATCCTACACCCTCT-ATGTCTCTTCACAATGTCAAACTAGAGTCAAGCTCAACAG 17917 Query 300 GGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATA 359 ||||||||||||||||||||| ||| |||||||||| |||||||||||||||||||| Sbjct 17918 GGTCTTCTTTCCCCGCTGATTTTGCCTGGCCCGTTCCCCAGGCTGTGGTTTCGCTAGATA 17977 Query 360 GTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACG 419 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 17978 GTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAGTTAGATGACG 18037 Query 420 AGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTG 479 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 18038 AGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTG 18097 Query 480 AATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATCACTT 539 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 18098 AATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACACCACTT 18157 Query 540 TCTG 543 |||| Sbjct 18158 TCTG 18161 Score = 731 bits (810), Expect = 0.0 Identities = 492/544 (90%), Gaps = 8/544 (1%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||||| ||||| ||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 2446505 CTTTTATTCTACTCGAGATTTCTGTTCTCGATGAGTCCCCCTTAGGACACCTGCGTTATC 2446446 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 2446445 TTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACGCGGATC 2446386 Query 127 GGCCCGCGAAGGACCTT-AACGCCAGAAAATGGTCGGTGAAGACCAGTTCCGCTTCATTG 185 | ||||||| | ||| ||||| |||| |||| | || ||| ||||||||||||| Sbjct 2446385 AGTTCGCGAAGAAACTTTAACGCTAGAATATGGGAAATAAATCCCAATTCCGCTTCATTG 2446326 Query 186 ATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCG----CCGAAACGG-CTCC 240 |||||||||| ||||||||| |||||||||||||||| ||| ||||||| |||| Sbjct 2446325 ATTAAGTAAAGAAACGATAAAGGTAGTGGTATTTCACCGGCGTATGCCGAAACATACTCC 2446266 Query 241 CACTTATTCTACACCTCTCAA-GTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAG 299 ||||||| ||||||| ||| | ||| ||||||| ||| |||||||||||||||||||| Sbjct 2446265 CACTTATCCTACACC-CTCTATGTCTCTTCACAATGTCAAACTAGAGTCAAGCTCAACAG 2446207 Query 300 GGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATA 359 ||||||||||||||||||||| ||| |||||||||| |||||||||||||||||||| Sbjct 2446206 GGTCTTCTTTCCCCGCTGATTTTGCCTGGCCCGTTCCCCAGGCTGTGGTTTCGCTAGATA 2446147 Query 360 GTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACG 419 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 2446146 GTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAGTTAGATGACG 2446087 Query 420 AGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTG 479 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2446086 AGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTG 2446027 Query 480 AATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATCACTT 539 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 2446026 AATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACACCACTT 2445967 Query 540 TCTG 543 |||| Sbjct 2445966 TCTG 2445963 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1635199934592