Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Schizosaccharomyces_20pombe_20[genbank_20GCA_5F000002945.2_202007-
11-09] 4 sequences; 12,591,251 total letters
Query= NC_010671.1
Length=124279
Score E
Sequences producing significant alignments: (Bits) Value
seq1 248 7e-61
seq2 134 1e-26
>seq1
Length=5579133
Score = 248 bits (274), Expect = 7e-61
Identities = 749/1143 (66%), Gaps = 38/1143 (3%)
Strand=Plus/Minus
Query 65807 AAAGTGTCGGCCAGACCTTGAACTCCAATACCGATGGGACGATGACGCAAATTGGAACGT 65866
|||| ||||| ||||||||||| || | ||| | ||||||||| |||| |||| |||
Sbjct 4228829 AAAGCATCGGCAAGACCTTGAACACCCAAACCAACGGGACGATGGCGCATATTGCTACGG 4228770
Query 65867 CTCGCCTCAGGTACAGGGTAGTAATTGATATCGATAATGCGATTCAAATTGCGTGTCACC 65926
| || ||||| ||||| || || || | |||||||| || | || || || ||
Sbjct 4228769 CGAGCTTCAGGAACAGGATAATAGTTAACGTCGATAATCTTGTTGAGGTTACGAGTAACG 4228710
Query 65927 ACATGCACGATA-CGTCGCAATTGTTCGAAATCAAAATGTTTAGGACGATCGGGAGTGCC 65985
|| | ||||| | ||| | | | || ||||| ||| || || | |
Sbjct 4228709 ACCTTCACGACATCGT-GAAGCTTTTGGAAAT-----TGT-----ACTTTCCGTCTTTA- 4228662
Query 65986 GGACACCACAAACTTGGGAAGGGCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGG 66045
| ||| |||| | |||| || || ||||| || ||||| | ||||||||
Sbjct 4228661 -------ATAAATGTGGGCAAAGCAACTGAAGCAAGGTTACAAACAGCAACTTCGTCAGG 4228609
Query 66046 AGCGGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTG 66105
|| | || || ||||| || || ||||| || |||||| || || || | |||||
Sbjct 4228608 AGAAGAGTATTCAACAATCTCAGTACACAGGTTTGAGCAGCGAATAGTACCAACATTCTT 4228549
Query 66106 TTGATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAAC 66165
||||| ||| || ||||||| |||||| |||| |||| | ||| | || || |||||
Sbjct 4228548 CTGATTGGACTTACGGTTGCATGAATCCTTATACAACATGAAAGGATTACCAGTTTCAAC 4228489
Query 66166 TTGGGACTCAATGATGGCGTGCCAAA------GAGCGCGTGCCTTCACCGTACGTACCGC 66219
||| || | || ||||||| ||||| |||| || | | || ||| ||| |
Sbjct 4228488 TTGTGATTGAAGAATGGCGTACCAAACTTTTTGAGCAGGTAA--TGAACG-ACG-ACCAC 4228433
Query 66220 CCTACCTTTGCGTTCGTAATGTTCGTAGAGGTGTTCGAAGGATTCACCCCATACTTCGGA 66279
| | | | || || | |||||||||| | || |||||||| || || |
Sbjct 4228432 GGTTCTCCTTC--TCATACTTTTCGTAGAGGGCAACAAACTCGTCACCCCAAACATCTGC 4228375
Query 66280 CAGACATGGACACTTGTGTGGACACATCAGCGACCAATCACCATCCTGTTCTACACGACG 66339
|| || |||| || | || || | | | ||| | | | |||| ||||| |
Sbjct 4228374 CAAACCTGGAGCCTCATTGGGGCAGAAGAAGGTCCATTGCTCGTTACGTTCAACACGTTG 4228315
Query 66340 CATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAAT 66399
|||||| | ||||| ||||| | ||| ||||| | |||||||| || ||||| |
Sbjct 4228314 CATAAACAAGTCAGGAATCCACAAGGCATAGAACATTTCGCGTGCGCGGAAATCCTCGTT 4228255
Query 66400 GCCGTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTA 66459
||| ||| | || || | || | || || | | ||||||||||| || |||| ||
Sbjct 4228254 GCCATGAGTCTTTCGAAGTTCTAAAAAGTCCATAACATCGGCATGCCAAGGCTCCAAATA 4228195
Query 66460 GATGGCGAACGAGCCCATACGTTTGCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTT 66519
| || || | || ||| || || |||||||| || || ||||| |||||
Sbjct 4228194 GGCTGCAAAGGCACCAGGACGCTTATTACCTCCTTGGTCAACATAACGAGCTGTGTTGTT 4228135
Query 66520 GAAGACACGCAACATCGGTACGAGCCCGTTAGATTTGCCATTGGTGCCGTCGATGGGGGA 66579
| | ||||| | ||| || || | ||||| || | ||||| || || | || ||
Sbjct 4228134 GTAAACACGAATCATGGGGACAATTCCGTTGGAAGTACCATTAGTTCCAGCAATATACGA 4228075
Query 66580 TCCTCGTGCCCGTATATCGTGAACATTCAGACCAATACCACCGGCCGTCTTCGAGATGGC 66639
|| ||| | || | ||||| ||| | ||||||||| || || ||||| |||||
Sbjct 4228074 ACCGGTTGCTCTAATGTTGTGAATATTAATACCAATACCGCCAGCGGTCTTGGAGATCAT 4228015
Query 66640 AGCACA-ATCGGCCACTGTCCGGAATATGCCGTCAATGGAGTCACCCTTGATGGTCAGGA 66698
|||||| ||| | ||| | | || || ||||| ||||| | || || || | ||
Sbjct 4228014 AGCACACATC-TTGAGTGTGTCGTAGATTCCTTCAATAGAGTCGTCTTTCATCGTAACGA 4227956
Query 66699 GGTAGCATGAACTAAGTTGGGGTTTGGGTGTGGCGGCCGAGAAGAGGGTGGGTGTAGCGT 66758
|| | || ||| |||||||| || || |||| ||| || || |||| ||| |
Sbjct 4227955 GGAAACAAGAAGAGAGTTGGGGACGAGGAGTACCGGCATTGAAAAGAGTTGGTGAAGCAT 4227896
Query 66759 GCGTAAAGTAATGGCGAGACATGTAATTGTACGTCTCGATGACAGCATCAATGTTTTCGC 66818
| |||||||| | ||||||| ||||||| || || || |||| ||||||| || |
Sbjct 4227895 GGGTAAAGTAGCGTTGAGACATCAAATTGTATGTTTCAATAGCAGCTTCAATGTCCTCAC 4227836
Query 66819 CATGAATCCCGAGTGC-ACATCGCATCAGGAGGTATTGAGGCCGTTCGACCAGCCGATCC 66877
| || || || | || ||| ||||| | | | ||||| || || | || | ||
Sbjct 4227835 CGTGGATACCAACGGCGACA-CGCATAATCATATGCTGAGGGCGCTC-AGCAACTTTGCC 4227778
Query 66878 -TTGATATGCATTAAGTAGGAGCGTTCCAGGGTCTTGATACCAAAGTACGAGTAATTGAA 66936
| |||| ||| ||| || || || || | ||||||| |||||| | |||| ||||
Sbjct 4227777 GTCGATACGCAATAAATAAGAACGCTCTAAAGTCTTGAAGCCAAAGAAATTGTAAGTGAA 4227718
Query 66937 ATC 66939
|||
Sbjct 4227717 ATC 4227715
Score = 84.2 bits (92), Expect = 2e-11
Identities = 108/149 (72%), Gaps = 0/149 (0%)
Strand=Plus/Minus
Query 67058 TCCGTCTGCTTGTGCATGTTGGAGATGGCGATACGGGCGGCCAGGACACCATAATCGGGA 67117
|| || ||||| |||| |||||| | || || | || |||| | | ||||||| |||
Sbjct 4227569 TCGGTTTGCTTATGCAAGTTGGAAACAGCAATTCTAGCAGCCAAAATAGCATAATCAGGA 4227510
Query 67118 TGTAGAGTCATCATACTGGCGGCAGTTTCAGCGGCCAAGGTATCAAGTTCAGCGGTAGTC 67177
|| || ||||| | |||||||||||||| || || |||| | |||| || ||
Sbjct 4227509 TGCTTTGTAGTCATAGTCGCGGCAGTTTCAGCAGCTAAATTATCCAATTCAATAGTGGTA 4227450
Query 67178 ACACCAGGATACAGGCCAGCAACGACTTT 67206
||||| ||||||| |||| || ||||||
Sbjct 4227449 ACACCGGGATACACACCAGAAATGACTTT 4227421
>seq2
Length=4539804
Score = 134 bits (148), Expect = 1e-26
Identities = 566/879 (64%), Gaps = 20/879 (2%)
Strand=Plus/Plus
Query 61045 AATCCTCGTCGTTTCGTATTGTTCCCCATCGAGTATGAGGATATTTGGCGCATGTACAAA 61104
||||||| || || || ||||| || || ||||| | || ||||||| | |||||
Sbjct 3721968 AATCCTCACCGCTTTGTTTTGTTTCCAATTAAGTATCACGAAATTTGGCAATTCTACAAG 3722027
Query 61105 AAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAATGAC 61164
||||| ||||| || || ||||| | ||||| | ||| | || |||||| || |||
Sbjct 3722028 AAGGCTGAAGCATCTTTTTGGACTGCTGAGGAAATTGATCTTTCGAAAGACTTGGTTGAT 3722087
Query 61165 TGGGAGCGTTTATCGAGCGGTGAACAACATTTCATTAAA--CA-TGTGTTGGCGTTCTTT 61221
||||| | | | ||| ||| || | ||| || ||| | || | ||
Sbjct 3722088 TGGGATAACAAGTTAAATGCTGATGAACGTTACTTTATTTCCACTGTACTCGCCTATTTC 3722147
Query 61222 GCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGTTTC-GCGCAGGAGGTGCA 61280
|| || || || ||||| || ||||||||| | | || |||||| || | | || | ||
Sbjct 3722148 GCTGCGTCAGATGGTATTGTTAATGAGAATCTTCTCGAGCGTTTCAGCTCTGAAGTT-CA 3722206
Query 61281 AGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGA 61340
| | || || |||||| | || || ||||| ||| || || ||| | ||||| ||
Sbjct 3722207 GATCCCTGAAGCTCGTTGTGTTTATGGTTTCCAAATTATGATTGAAAATATTCACTCTGA 3722266
Query 61341 GATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGCGGAACGTGAACGATTGTT 61400
|| ||| || | | ||||| ||||| | || | |||| | || ||
Sbjct 3722267 GACCTACTCACTTTTGCTTGATACATACATTCGTGAACCTAAGGAAAAACAGCGTCATTT 3722326
Query 61401 CAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGC-CTTCAATTGGA 61459
| |||| || || || | | ||| ||||| | ||||| |||| |||||
Sbjct 3722327 CGATGCTATTTTAACAATGGGTTCTATTAAGGCCAAAGCCAAGTGGGCTCTTCG-TTGGA 3722385
Query 61460 TCACCAGTACAACGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGGGTG 61519
| | | | | || | || || ||| | || ||||| | || || |||
Sbjct 3722386 TTAATGATGAAGATTCCACCTATGCAATTCGTTTGGTTGCCTTTGCTGCTGTAGAAGGTA 3722445
Query 61520 TATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCG 61579
| || || ||||||||||||| | || |||||| | |||||||||||||||||||| |
Sbjct 3722446 TCTTCTTTTCTGGATCGTTTGCCTCTATTTTTTGGCTTAAGAAACGTGGACTTATGCCTG 3722505
Query 61580 GTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGTGATTTTGCTG 61639
|||| || || |||||| ||||| | || || ||||| | || || |||||
Sbjct 3722506 GTCTTACTTTTTCCAATGAATTGATTTGTCGTGATGAGGGTCTTCACACCGACTTTGCCT 3722565
Query 61640 TTTTGCTATTCAAACGCTATCTGGTGAATCGTCC--GTCGGAGGAGCGTGTGGGTGAGAT 61697
|||| | || | | || || | | | || | || | || ||| | | ||
Sbjct 3722566 GTTTGATGTTTA---GTCATTTGAAGCACAGACCAGGCCGCA--AGGTTGTTGAAGCCAT 3722620
Query 61698 TGTTCGTGAGGCGGTAACTATCGAACAGGAATTTCTGACTGACGCTTTGCCCGTCTCACT 61757
| || ||| || || ||| || | |||| | || |||||| | ||||| ||
Sbjct 3722621 TATTGTTGAAGCTGTTGATATTGAGAAAGAATACTTCACGGACGCTCTTCCCGTTAGTCT 3722680
Query 61758 CATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGACCGTCTGTT 61817
| || |||||| | | |||| |||||||||||||||||||| || ||| ||||
Sbjct 3722681 GCTTGGTATGAATAAGGATTTGATGTGTCAGTATATTGAATTTGTTGCTGATCGTTTGTT 3722740
Query 61818 GGTCGATTTGGG-TATGAAGCGGATCTATAATACGAAA--AACCCATTTGATTTCATGGA 61874
||| | |||||| |||| | | ||||| ||| || || || || |||||||||||
Sbjct 3722741 GGTTGCTTTGGGCAATGACAAGTA-CTATA--ACGTAACCAATCCTTTCGATTTCATGGA 3722797
Query 61875 CATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAA 61913
| || || | | || || || ||||| || || ||
Sbjct 3722798 GAATATCTCTTTAGCAGGAAAAACAAATTTCTTTGAAAA 3722836
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397567980618560
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