Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizosaccharomyces_20pombe_20[genbank_20GCA_5F000002945.2_202007- 11-09] 4 sequences; 12,591,251 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq1 248 7e-61 seq2 134 1e-26 >seq1 Length=5579133 Score = 248 bits (274), Expect = 7e-61 Identities = 749/1143 (66%), Gaps = 38/1143 (3%) Strand=Plus/Minus Query 65807 AAAGTGTCGGCCAGACCTTGAACTCCAATACCGATGGGACGATGACGCAAATTGGAACGT 65866 |||| ||||| ||||||||||| || | ||| | ||||||||| |||| |||| ||| Sbjct 4228829 AAAGCATCGGCAAGACCTTGAACACCCAAACCAACGGGACGATGGCGCATATTGCTACGG 4228770 Query 65867 CTCGCCTCAGGTACAGGGTAGTAATTGATATCGATAATGCGATTCAAATTGCGTGTCACC 65926 | || ||||| ||||| || || || | |||||||| || | || || || || Sbjct 4228769 CGAGCTTCAGGAACAGGATAATAGTTAACGTCGATAATCTTGTTGAGGTTACGAGTAACG 4228710 Query 65927 ACATGCACGATA-CGTCGCAATTGTTCGAAATCAAAATGTTTAGGACGATCGGGAGTGCC 65985 || | ||||| | ||| | | | || ||||| ||| || || | | Sbjct 4228709 ACCTTCACGACATCGT-GAAGCTTTTGGAAAT-----TGT-----ACTTTCCGTCTTTA- 4228662 Query 65986 GGACACCACAAACTTGGGAAGGGCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGG 66045 | ||| |||| | |||| || || ||||| || ||||| | |||||||| Sbjct 4228661 -------ATAAATGTGGGCAAAGCAACTGAAGCAAGGTTACAAACAGCAACTTCGTCAGG 4228609 Query 66046 AGCGGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTG 66105 || | || || ||||| || || ||||| || |||||| || || || | ||||| Sbjct 4228608 AGAAGAGTATTCAACAATCTCAGTACACAGGTTTGAGCAGCGAATAGTACCAACATTCTT 4228549 Query 66106 TTGATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAAC 66165 ||||| ||| || ||||||| |||||| |||| |||| | ||| | || || ||||| Sbjct 4228548 CTGATTGGACTTACGGTTGCATGAATCCTTATACAACATGAAAGGATTACCAGTTTCAAC 4228489 Query 66166 TTGGGACTCAATGATGGCGTGCCAAA------GAGCGCGTGCCTTCACCGTACGTACCGC 66219 ||| || | || ||||||| ||||| |||| || | | || ||| ||| | Sbjct 4228488 TTGTGATTGAAGAATGGCGTACCAAACTTTTTGAGCAGGTAA--TGAACG-ACG-ACCAC 4228433 Query 66220 CCTACCTTTGCGTTCGTAATGTTCGTAGAGGTGTTCGAAGGATTCACCCCATACTTCGGA 66279 | | | | || || | |||||||||| | || |||||||| || || | Sbjct 4228432 GGTTCTCCTTC--TCATACTTTTCGTAGAGGGCAACAAACTCGTCACCCCAAACATCTGC 4228375 Query 66280 CAGACATGGACACTTGTGTGGACACATCAGCGACCAATCACCATCCTGTTCTACACGACG 66339 || || |||| || | || || | | | ||| | | | |||| ||||| | Sbjct 4228374 CAAACCTGGAGCCTCATTGGGGCAGAAGAAGGTCCATTGCTCGTTACGTTCAACACGTTG 4228315 Query 66340 CATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAAT 66399 |||||| | ||||| ||||| | ||| ||||| | |||||||| || ||||| | Sbjct 4228314 CATAAACAAGTCAGGAATCCACAAGGCATAGAACATTTCGCGTGCGCGGAAATCCTCGTT 4228255 Query 66400 GCCGTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTA 66459 ||| ||| | || || | || | || || | | ||||||||||| || |||| || Sbjct 4228254 GCCATGAGTCTTTCGAAGTTCTAAAAAGTCCATAACATCGGCATGCCAAGGCTCCAAATA 4228195 Query 66460 GATGGCGAACGAGCCCATACGTTTGCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTT 66519 | || || | || ||| || || |||||||| || || ||||| ||||| Sbjct 4228194 GGCTGCAAAGGCACCAGGACGCTTATTACCTCCTTGGTCAACATAACGAGCTGTGTTGTT 4228135 Query 66520 GAAGACACGCAACATCGGTACGAGCCCGTTAGATTTGCCATTGGTGCCGTCGATGGGGGA 66579 | | ||||| | ||| || || | ||||| || | ||||| || || | || || Sbjct 4228134 GTAAACACGAATCATGGGGACAATTCCGTTGGAAGTACCATTAGTTCCAGCAATATACGA 4228075 Query 66580 TCCTCGTGCCCGTATATCGTGAACATTCAGACCAATACCACCGGCCGTCTTCGAGATGGC 66639 || ||| | || | ||||| ||| | ||||||||| || || ||||| ||||| Sbjct 4228074 ACCGGTTGCTCTAATGTTGTGAATATTAATACCAATACCGCCAGCGGTCTTGGAGATCAT 4228015 Query 66640 AGCACA-ATCGGCCACTGTCCGGAATATGCCGTCAATGGAGTCACCCTTGATGGTCAGGA 66698 |||||| ||| | ||| | | || || ||||| ||||| | || || || | || Sbjct 4228014 AGCACACATC-TTGAGTGTGTCGTAGATTCCTTCAATAGAGTCGTCTTTCATCGTAACGA 4227956 Query 66699 GGTAGCATGAACTAAGTTGGGGTTTGGGTGTGGCGGCCGAGAAGAGGGTGGGTGTAGCGT 66758 || | || ||| |||||||| || || |||| ||| || || |||| ||| | Sbjct 4227955 GGAAACAAGAAGAGAGTTGGGGACGAGGAGTACCGGCATTGAAAAGAGTTGGTGAAGCAT 4227896 Query 66759 GCGTAAAGTAATGGCGAGACATGTAATTGTACGTCTCGATGACAGCATCAATGTTTTCGC 66818 | |||||||| | ||||||| ||||||| || || || |||| ||||||| || | Sbjct 4227895 GGGTAAAGTAGCGTTGAGACATCAAATTGTATGTTTCAATAGCAGCTTCAATGTCCTCAC 4227836 Query 66819 CATGAATCCCGAGTGC-ACATCGCATCAGGAGGTATTGAGGCCGTTCGACCAGCCGATCC 66877 | || || || | || ||| ||||| | | | ||||| || || | || | || Sbjct 4227835 CGTGGATACCAACGGCGACA-CGCATAATCATATGCTGAGGGCGCTC-AGCAACTTTGCC 4227778 Query 66878 -TTGATATGCATTAAGTAGGAGCGTTCCAGGGTCTTGATACCAAAGTACGAGTAATTGAA 66936 | |||| ||| ||| || || || || | ||||||| |||||| | |||| |||| Sbjct 4227777 GTCGATACGCAATAAATAAGAACGCTCTAAAGTCTTGAAGCCAAAGAAATTGTAAGTGAA 4227718 Query 66937 ATC 66939 ||| Sbjct 4227717 ATC 4227715 Score = 84.2 bits (92), Expect = 2e-11 Identities = 108/149 (72%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 67058 TCCGTCTGCTTGTGCATGTTGGAGATGGCGATACGGGCGGCCAGGACACCATAATCGGGA 67117 || || ||||| |||| |||||| | || || | || |||| | | ||||||| ||| Sbjct 4227569 TCGGTTTGCTTATGCAAGTTGGAAACAGCAATTCTAGCAGCCAAAATAGCATAATCAGGA 4227510 Query 67118 TGTAGAGTCATCATACTGGCGGCAGTTTCAGCGGCCAAGGTATCAAGTTCAGCGGTAGTC 67177 || || ||||| | |||||||||||||| || || |||| | |||| || || Sbjct 4227509 TGCTTTGTAGTCATAGTCGCGGCAGTTTCAGCAGCTAAATTATCCAATTCAATAGTGGTA 4227450 Query 67178 ACACCAGGATACAGGCCAGCAACGACTTT 67206 ||||| ||||||| |||| || |||||| Sbjct 4227449 ACACCGGGATACACACCAGAAATGACTTT 4227421 >seq2 Length=4539804 Score = 134 bits (148), Expect = 1e-26 Identities = 566/879 (64%), Gaps = 20/879 (2%) Strand=Plus/Plus Query 61045 AATCCTCGTCGTTTCGTATTGTTCCCCATCGAGTATGAGGATATTTGGCGCATGTACAAA 61104 ||||||| || || || ||||| || || ||||| | || ||||||| | ||||| Sbjct 3721968 AATCCTCACCGCTTTGTTTTGTTTCCAATTAAGTATCACGAAATTTGGCAATTCTACAAG 3722027 Query 61105 AAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAATGAC 61164 ||||| ||||| || || ||||| | ||||| | ||| | || |||||| || ||| Sbjct 3722028 AAGGCTGAAGCATCTTTTTGGACTGCTGAGGAAATTGATCTTTCGAAAGACTTGGTTGAT 3722087 Query 61165 TGGGAGCGTTTATCGAGCGGTGAACAACATTTCATTAAA--CA-TGTGTTGGCGTTCTTT 61221 ||||| | | | ||| ||| || | ||| || ||| | || | || Sbjct 3722088 TGGGATAACAAGTTAAATGCTGATGAACGTTACTTTATTTCCACTGTACTCGCCTATTTC 3722147 Query 61222 GCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGTTTC-GCGCAGGAGGTGCA 61280 || || || || ||||| || ||||||||| | | || |||||| || | | || | || Sbjct 3722148 GCTGCGTCAGATGGTATTGTTAATGAGAATCTTCTCGAGCGTTTCAGCTCTGAAGTT-CA 3722206 Query 61281 AGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGA 61340 | | || || |||||| | || || ||||| ||| || || ||| | ||||| || Sbjct 3722207 GATCCCTGAAGCTCGTTGTGTTTATGGTTTCCAAATTATGATTGAAAATATTCACTCTGA 3722266 Query 61341 GATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGCGGAACGTGAACGATTGTT 61400 || ||| || | | ||||| ||||| | || | |||| | || || Sbjct 3722267 GACCTACTCACTTTTGCTTGATACATACATTCGTGAACCTAAGGAAAAACAGCGTCATTT 3722326 Query 61401 CAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGC-CTTCAATTGGA 61459 | |||| || || || | | ||| ||||| | ||||| |||| ||||| Sbjct 3722327 CGATGCTATTTTAACAATGGGTTCTATTAAGGCCAAAGCCAAGTGGGCTCTTCG-TTGGA 3722385 Query 61460 TCACCAGTACAACGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGGGTG 61519 | | | | | || | || || ||| | || ||||| | || || ||| Sbjct 3722386 TTAATGATGAAGATTCCACCTATGCAATTCGTTTGGTTGCCTTTGCTGCTGTAGAAGGTA 3722445 Query 61520 TATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCG 61579 | || || ||||||||||||| | || |||||| | |||||||||||||||||||| | Sbjct 3722446 TCTTCTTTTCTGGATCGTTTGCCTCTATTTTTTGGCTTAAGAAACGTGGACTTATGCCTG 3722505 Query 61580 GTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGTGATTTTGCTG 61639 |||| || || |||||| ||||| | || || ||||| | || || ||||| Sbjct 3722506 GTCTTACTTTTTCCAATGAATTGATTTGTCGTGATGAGGGTCTTCACACCGACTTTGCCT 3722565 Query 61640 TTTTGCTATTCAAACGCTATCTGGTGAATCGTCC--GTCGGAGGAGCGTGTGGGTGAGAT 61697 |||| | || | | || || | | | || | || | || ||| | | || Sbjct 3722566 GTTTGATGTTTA---GTCATTTGAAGCACAGACCAGGCCGCA--AGGTTGTTGAAGCCAT 3722620 Query 61698 TGTTCGTGAGGCGGTAACTATCGAACAGGAATTTCTGACTGACGCTTTGCCCGTCTCACT 61757 | || ||| || || ||| || | |||| | || |||||| | ||||| || Sbjct 3722621 TATTGTTGAAGCTGTTGATATTGAGAAAGAATACTTCACGGACGCTCTTCCCGTTAGTCT 3722680 Query 61758 CATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGACCGTCTGTT 61817 | || |||||| | | |||| |||||||||||||||||||| || ||| |||| Sbjct 3722681 GCTTGGTATGAATAAGGATTTGATGTGTCAGTATATTGAATTTGTTGCTGATCGTTTGTT 3722740 Query 61818 GGTCGATTTGGG-TATGAAGCGGATCTATAATACGAAA--AACCCATTTGATTTCATGGA 61874 ||| | |||||| |||| | | ||||| ||| || || || || ||||||||||| Sbjct 3722741 GGTTGCTTTGGGCAATGACAAGTA-CTATA--ACGTAACCAATCCTTTCGATTTCATGGA 3722797 Query 61875 CATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAA 61913 | || || | | || || || ||||| || || || Sbjct 3722798 GAATATCTCTTTAGCAGGAAAAACAAATTTCTTTGAAAA 3722836 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397567980618560