Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20brassicae_20[genbank_20GCA_5F001600295.1_202016-03-01] 16 sequences; 23,647,732 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq11 86.0 1e-14 seq6 86.0 1e-14 >seq11 Length=816260 Score = 86.0 bits (94), Expect = 1e-14 Identities = 79/97 (81%), Gaps = 5/97 (5%) Strand=Plus/Minus Query 59 CATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACC 118 || |||||| |||| |||||||||||| ||| ||| ||||||| ||||| || || Sbjct 770903 CACGACGGTTGAAACTCAGCTCACGTTCTTTATCAGT---TGAACAAGTCAACG-TTGCC 770848 Query 119 GAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCG 155 ||| ||||||| || | |||||||||||||||||||| Sbjct 770847 GAACTCTGCTT-GGCAAGATAGGAAGAGCCGACATCG 770812 >seq6 Length=1670010 Score = 86.0 bits (94), Expect = 1e-14 Identities = 61/70 (87%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 32 CATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTAT 91 ||||||||||| | | ||||||||||||| |||||||| | |||||||||||||||||| Sbjct 734318 CATCAGTAGGGCAGAGCTAACCTGTCTCACGACGGTCTTATGCCAGCTCACGTTCCCTAT 734259 Query 92 TAGTGGGTGA 101 ||| | |||| Sbjct 734258 TAGAGCGTGA 734249 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854399863296