Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20brassicae_20[genbank_20GCA_5F001600295.1_202016-03-01] 16 sequences; 23,647,732 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq3 251 6e-62 seq12 176 4e-39 seq1 96.9 3e-15 >seq3 Length=2410059 Score = 251 bits (278), Expect = 6e-62 Identities = 1201/1877 (64%), Gaps = 75/1877 (4%) Strand=Plus/Minus Query 65078 TCGACCGTGAACTGGATCGCATTAGCAGCCGCCTTGGTCCTAAGATAGTACATGCCGGTC 65137 ||||| ||||||||||| || || || | | ||| | ||| ||||| || |||||| Sbjct 1855601 TCGACGGTGAACTGGATGGCGTTGGCCGAAGGACGGGTACGAAGGTAGTAGATACCGGTC 1855542 Query 65138 TTGAGGCCAGCACGCCAAGCA-TAGAAATGCATCGATGATAATTTTGCATAATTCGGC-T 65195 ||||| || || | | ||| ||||| ||||| || | ||| | | | || || | Sbjct 1855541 TTGAGACC-GCGCTTCCAGCCGTAGAAGTGCATGGAAG-TAAGCTGGGAGAACGAGGGGT 1855484 Query 65196 CGGCCACATGCATATTCAACGACTGACTCTGATCGATGTAACGACCACGATCTGCAGCCA 65255 || || || || |||||||||||| ||| |||||| | |||||| || ||||| | Sbjct 1855483 TGGACAGGTGAATGTTCAACGACTGAGACTGGTCGATGAAGGCACCACGGTCGGCAGCAA 1855424 Query 65256 TGTCAATGATACGACGTCC-CGATATCTCCCAGACGGTCTTGTACAGGCGACGT-ACCTC 65313 |||||||| | ||| || ||| ||||||||||| |||||||| | ||| | | ||| Sbjct 1855423 GGTCAATGACA-GACTTCTGCGAAATCTCCCAGACAGTCTTGTAAATA-GACTTGATCTC 1855366 Query 65314 AATTGGAATCTCCTCAATGTCCTGGACTGAACCACGACGTGCAATAATGCGATTACGCAT 65373 || || | ||||| ||||| ||||||| | ||||| | | | | ||| Sbjct 1855365 GTCGGGGATTCCAGGAATGTGCTGGATCGAACCACCAGAAGCAATGACGAGCTGCTTCAT 1855306 Query 65374 CGACTCTGACCACAAACCCAAATCGATAAGATGTTGAACCA---AGTGACGATTGATGAC 65430 ||| ||| | | | | ||| || | ||| | || | | || ||| Sbjct 1855305 GTTCTCGTCCCAGAGGTCAAGGTTGATGAGGTCACGAAGGAGCCAGGGGCA---GACGAC 1855249 Query 65431 TTGGAACTCGCCGGACAGTACACGACGGACATAGATGTTGGACGTGATGGGTTCAAAGGA 65490 ||||| || ||||| || |||||||| |||| | || ||| || || ||| | Sbjct 1855248 CTGGAAGTCACCGGAAAGAACACGACGAGAGTAGAGCATCGAGGTGTAAGGCTCGAAGCA 1855189 Query 65491 TTCAGTGTTGCCTAGAATTTGGGCAGTAGATGCAGTTGGCATGGGAGCGACCAACAATGA 65550 || | ||| ||||| || | ||| || ||||| |||||||||||||| | | || Sbjct 1855188 CTCGTTCCAGCCAAGAATCTGCGAAGTCGAGGCAGTGGGCATGGGAGCGACAAGGAGCGA 1855129 Query 65551 GTTTCGCAATCCGTTCATTTCAATGTTGTGACGCAATTCGTCCCAGTTCCACATCGGTTT 65610 ||| || | |||| | | |||| || | ||| | |||||||||||||| | ||| Sbjct 1855128 GTTGCGGACACCGTACTTGGCAATCTTCTCACGGAGCTCGTCCCAGTTCCAGA--GGTCG 1855071 Query 65611 ATCGTCGACATCCACGGGCC-ACATATCCTGTTGCAGGGTTCC----GATACTGGCCGGT 65665 | | |||| ||| || | | || || || | || || | ||| | Sbjct 1855070 GTAGG-GACA----CGGCCCCAGAGGTCGAACTGGAGCTTGCCCTGCGAGA-TGG---GG 1855020 Query 65666 GAACCGAGGAAACTATCGTACACTCCCTCCTCCTTGGCAAGTTGACAGCTGGTCTCGAGT 65725 || || | | | ||| ||| |||| || | | ||| || |||||| Sbjct 1855019 GAGCCCTCGTACGAAGGGTAGGTTCCGACCTCAGCAGCCATCTCACACGAGGACTCGAGG 1854960 Query 65726 GCGGCAAAATAAATGGTCTCGAAAATGCGTCGATTAAGTTCACGTGCCTCATCGCTCTCG 65785 || || || ||||||||||| || | | || || ||| |||||| ||| Sbjct 1854959 GCAGCGTGGTAGATGGTCTCGAAGATCTGGAGGTTGAGCCGACGAGCCTCAGGCGAGTCG 1854900 Query 65786 TACGGCATACCCATCAGGACAAAAGTGTCGGCCAGACCTTGAACTCCAATACCGATGGGA 65845 | ||||| | | | ||| | ||||||||||| || || |||| ||||| || Sbjct 1854899 AAGGGCATGCGGAGAGCCATAAACGCATCGGCCAGACCCTGGACACCAAGACCGACTGGG 1854840 Query 65846 CGATGACGCAAATTGGAACGTCTCGCCTCAGGTACAGGGTAGTAATTGATATCGATAATG 65905 || ||||||| ||||| | |||||||| ||||||||||| ||| ||| | Sbjct 1854839 CGGTGACGCATGTTGGAGTTGCGAGCCTCAGGGACAGGGTAGTAGTTGCGCGTGATGACA 1854780 Query 65906 CGATTCAAATTGCGTG-TCACCACATGCACGATA-CGTCGCAATTGTTCGAAATCAAAAT 65963 | | |||| | | || | || || | ||| ||| ||| | | |||||| Sbjct 1854779 C-AGTCAAGGTTCTTGGTGACAACCTTGGTGATCTCGT-GCAGCTTCTTGAAATCG---- 1854726 Query 65964 GTTTAGGACGATCGGGAGTGCCGGACACCACAAACTTGGGAAGGGCA-----AGAGATG- 66017 ||| ||||| || |||| ||| || |||| || |||| Sbjct 1854725 ---TAGC-----------TGCCGCCACCCTCAAAGTTGACAAAGGCAGGGAGAGCGATGG 1854680 Query 66018 ---CGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACAATTTCGGTGCACA 66074 | ||||||||||| || | |||||| || || | ||||||| ||| |||||||| | Sbjct 1854679 AAGCAAGGTTGCAGACGGCGACCTCGTCGGGGGCAGAGTACTCGATAATCTCGGTGCAGA 1854620 Query 66075 GATTACTGCAGCGT--ATGGTGCCCAAATTCTGTTGATTACTCTTGCGATTGCATGCATC 66132 | || | || | || ||||| | | ||| || || |||||| ||| || || Sbjct 1854619 GGTTG--GAAGACTTGATAGTGCCGAGGTGCTGCTGGTTGGACTTGCGGTTGGCAGCGTC 1854562 Query 66133 CTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGATGGCGTGCCAAAG 66192 |||||| | |||| | ||| || ||||| || | ||||| ||| || ||| || Sbjct 1854561 CTTGTAAAGCATGAAGGGACCACCAGTCTCGGTCTGAGCCTCAAGGATAGCAAACCAGAG 1854502 Query 66193 AGCGCGTGCCTTCACCGTACGTACCGCCCTA-CCTTTGCGTTCGTAATGTTCGTAGAGGT 66251 | ||||| | || | | | ||||| || | ||| ||||| | ||||||||| Sbjct 1854501 CTTCTGAGCCTTGATGGT-CTTGCGGCCCTTGCCCTCGCGCTCGTACTTTTCGTAGAGAG 1854443 Query 66252 GTTCGAAGGATTCACCCCAT--ACTTCGGACAGACATGGACACTTGTGTGGACACATCAG 66309 || || | | || | || |||| |||| || |||| | || ||||| || Sbjct 1854442 CCTCAAAC--TCCTCCGAGTGGACGTCGGCAAGACCGGGGCACTCGGCAGGGCACATGAG 1854385 Query 66310 CGACCAATCACCATCCTGTTCTACACGACGCATAAATAGATCAGGTATCCAGAGGGCGTA 66369 | ||| || || ||| || || || ||| || || || || | |||||||||||| Sbjct 1854384 AGTCCACTCGCCGTCCGCCTCAACGCGCTTCATGAAGAGGTCGGGAACCCAGAGGGCGTA 1854325 Query 66370 GAAGAGATCGCGTGCTCGTTGCTCCTCAATGCCGTGATTTTTGCGCAAGTCGAGGAACTC 66429 ||| || || || || || |||||| | ||||| || || || | ||||||||| || Sbjct 1854324 GAACAGGTCACGGGCACGAACCTCCTCCTTTCCGTGGTTCTTACGGAGGTCGAGGAAGTC 1854265 Query 66430 AAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATACGTTTGCCGCC 66489 |||| ||| |||||||| || || ||||||||||| || | || || || || Sbjct 1854264 GAAGACGTCCGCATGCCAAGGCTCAAGGTAGATGGCAAAGGCACCGGGGCGCTTATTACC 1854205 Query 66490 ACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGCAACATCGGTACGAGCCCGTT 66549 || |||||||||||||| || || | || |||| | ||| || || | ||||| Sbjct 1854204 GCCCTGGTCGACGTAGCGGGCAGTCGCGTCGTAGGCACGGAGCATGGGAACAATACCGTT 1854145 Query 66550 AGATTTGCCATTGGTGCCGTCGATGGGGGATCCTCGTGCCCGTATATCGTGAACATTCAG 66609 || | || |||||||| | ||| || || || || || | ||| | | || Sbjct 1854144 GGAGTAACCGTTGGTGCCAGCAATGTACGAGCCCTTGGCACGGATGTTGTGGATGTGGAG 1854085 Query 66610 ACCAATACCACCGGCCGTCTTCGAGATGGCAGCACA-ATC-GGCCACTGTCCGGAATATG 66667 ||| ||||| ||||| ||||| ||||| ||| || || | | |||| | | || Sbjct 1854084 ACCGATACCGCCGGCAGTCTTGGAGATCTGAGCGCAGGTCTTGAGAGTGTC--GTAGATA 1854027 Query 66668 CCGTCAATGGAGTCACCCTTGATGGTCAGGAGGTAGCATGAACTAAGTTGGGGTTTGGGT 66727 ||||| || |||||| |||| || | | |||| ||||||| | ||||| | | Sbjct 1854026 CCGTCGATAGAGTCATCCTTCATCGCGACGAGGAAGCATGACGACATCTGGGGGTGCTGG 1853967 Query 66728 GTGGCGGCCGAGAAGAGGGTGGGTGTAGCGTGCGTAAAGTAATGGCGAGACATGTAATTG 66787 || | || |||||| || || | ||||| || ||||| | |||||| ||| Sbjct 1853966 GTACCAGCGTTGAAGAGAGTAGGCGAGGCGTGGGTGAAGTAGCGCTCGGACATGAGGTTG 1853907 Query 66788 TACGTCTCGATGACAGCATCAATGTTTTCGCCATGAATCCCGAGTGCACATCGCATCAGG 66847 || ||||| ||||| |||||||| ||||| || || || | | | ||||| | Sbjct 1853906 TAGGTCTCAATGACCTTTTCAATGTTGTCGCCGTGGATACCAATAGAAACACGCATGATC 1853847 Query 66848 AGGTATTGAGGCCGTTCGACCAGCCGATCCTTGATATGCATTAAGTAGGAGCGTTCCAGG 66907 | || || || || ||| | | | | | || ||| | ||| ||||| || || Sbjct 1853846 ATGTGCTGGGGACGCTCGGCAACCTTGCCGTCAATGCGCAAGAGGTATGAGCGCTCAAGC 1853787 Query 66908 GTCTTGATACCAAAGTA 66924 ||||||| ||| ||||| Sbjct 1853786 GTCTTGAAACCGAAGTA 1853770 >seq12 Length=785499 Score = 176 bits (194), Expect = 4e-39 Identities = 399/595 (67%), Gaps = 9/595 (2%) Strand=Plus/Minus Query 61320 CATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCG 61379 || |||||| | |||||||||| ||| | | || ||||| || |||||| | || Sbjct 745928 CAGGGAGAACATTCACTCGGAGACCTACTCTCTCCTTATCGACACCTACATCCGTGACAA 745869 Query 61380 GGCGGAACGTGAACGATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGC 61439 || ||| | | ||||| || |||||||| || || | ||| ||| || Sbjct 745868 CGCTCGTCGTCAGTACCTCTTCAAAGCTATCGAGACCATCCCCTGCATCAAGAAGAAGGC 745809 Query 61440 GGATTGGGC-CTTCAATTGGATCACCAGTACAACGGCTA--CATTTGGTGAACGATTGCT 61496 || ||||| |||| ||||||| | | || || ||| | |||| || || | | Sbjct 745808 CGACTGGGCTCTTCG-TTGGATCTC--GGACGACAGCTCGTCCTTTGCGGAGCGTCTCAT 745752 Query 61497 GGCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTT 61556 || ||||| | || |||||| | || ||| ||||||||||||| | ||||| ||| | Sbjct 745751 TGCCTTTGCCGCCGTTGAGGGTATCTTCTTCTCTGGATCGTTTGCCTCCATCTTCTGGCT 745692 Query 61557 GAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGA 61616 ||||| ||||| || ||||| || || |||||| ||| ||| | || || || ||||| Sbjct 745691 CAAGAAGCGTGGCCTCATGCCTGGCCTCACCTTCTCCAACGAGCTCATCTCTCGTGACGA 745632 Query 61617 GGGCATGCATTGTGATTTTGCTGTTTTGCTATTCAAACGCTATCTGGTGAATCGTCCGTC 61676 ||| | || || |||||| | | || |||| | | ||| | ||| || Sbjct 745631 GGGTCTCCACACCGACTTTGCTTGTCTCCTCTTCACCCAC---CTGAAGCGTCGCCCCCA 745575 Query 61677 GGAGGAGCGTGTGGGTGAGATTGTTCGTGAGGCGGTAACTATCGAACAGGAATTTCTGAC 61736 || | | | |||| | || ||||| || | || || ||||| || || || Sbjct 745574 CCCCGACCTCATTGAGAAGATCATCCGCGAGGCCGTCAAGATTGAGCAGGAGTTCCTCAC 745515 Query 61737 TGACGCTTTGCCCGTCTCACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGA 61796 || ||| | ||||| || |||||||||||||| || |||| ||||| ||||| Sbjct 745514 CGAGGCTCTCCCCGTGTCTCTCATCGGCATGAACGCCAACCTCATGTGCCAGTACATTGA 745455 Query 61797 ATTTGTTGCCGACCGTCTGTTGGTCGATTTGGGTATGAAGCGGATCTATAATACGAAAAA 61856 ||||| |||||||||||| | |||| | || | || ||| || || ||| || Sbjct 745454 GTTTGTCGCCGACCGTCTGCTCGTCGCCCTCGGCAACGAGAAGATTTACAAGTCGACCAA 745395 Query 61857 CCCATTTGATTTCATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAG 61911 ||| || || || ||||| ||||| |||||| | |||||| | || || |||||| Sbjct 745394 CCCCTTCGACTTTATGGAGATGATCTCGCTGCAGGGCAAGGCCAACTTCTTCGAG 745340 >seq1 Length=5410471 Score = 96.9 bits (106), Expect = 3e-15 Identities = 101/133 (76%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 61488 ACGATTGCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAAT 61547 ||| ||| | || |||||| |||||||| | || ||| || ||||||||||| || Sbjct 364522 ACGGTTGATCGCGTTTGCGTGCGTCGAGGGCATCTTCTTCTCGGGGTCGTTTGCCGCCAT 364581 Query 61548 CTTTTGGTTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATC 61607 ||| ||| | || || || || ||||||| ||| ||||||||| ||| ||| | || || Sbjct 364582 CTTCTGGCTCAAAAAGCGCGGGCTTATGCGCGGCCTGACCTTCTCCAACGAGCTCATCTC 364641 Query 61608 ACGCGACGAGGGC 61620 |||||||||||| Sbjct 364642 CCGCGACGAGGGC 364654 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397567922474240