Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20domesticum_20[genbank_20GCA_5F001599015.1_202016-03- 01] 28 sequences; 24,510,922 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq1 255 5e-63 seq11 156 3e-33 >seq1 Length=4014173 Score = 255 bits (282), Expect = 5e-63 Identities = 625/939 (67%), Gaps = 10/939 (1%) Strand=Plus/Plus Query 65991 CCACAAACTTGGGAAGGGCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGG 66050 |||| ||| ||||||||||| || || ||||||||||| || | |||||| |||| | Sbjct 2026212 CCACGAACGCGGGAAGGGCAATGGAGGCAAGGTTGCAGACGGCAACCTCGTCGGGAGAAG 2026271 Query 66051 TATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGAT 66110 ||||||| || || ||||| || || | || ||||||| | ||| || | Sbjct 2026272 AGTACTCGATGATCTCAGTGCAGAGGTTGGACGACTTGATAGTGCCCAGGTGCTGCTGGT 2026331 Query 66111 TACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGG 66170 || |||||| ||| ||||||||||| | ||| | || || ||||| |||| Sbjct 2026332 TAGACTTGCGGTTGGCAGCATCCTTGTAGAGGATGAAGGGGCCACCAGTCTCGGTCTGGG 2026391 Query 66171 ACTCAATGATGGCGTGCCAAAGAGCGCGTGCCTTCACCGTACGTACCGCCCTA-CCTTTG 66229 ||||| ||||| ||| || | ||||| | || | | | |||| || | Sbjct 2026392 CCTCAAGAATGGCAAACCAGAGCTTCTGGGCCTTGATGGT-CTTGCGACCCTTGCCCTCA 2026450 Query 66230 CGTTCGTAATGTTCGTAGAGGTGTTCGAAGGATTCACCCCAT--ACTTCGGACAGACATG 66287 || ||||| | | ||| ||| || || ||| || | || |||| |||| | Sbjct 2026451 CGCTCGTACTTCTGGTACAGGGTCTCAAAC--TTCTCCGAGTGAACGTCGGCAAGACCAG 2026508 Query 66288 GACACTTGTGTGGACACATCAGCGACCAATCACCATCCTGTTCTACACGACGCATAAATA 66347 | |||| | || ||||| || | ||| ||||| || || ||||| ||| || | Sbjct 2026509 GGCACTCGGCGGGGCACATGAGGGTCCAGTCACCGTCGGCCTCGACACGCTTCATGAAGA 2026568 Query 66348 GATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCCGTGAT 66407 | ||||| | |||||| |||||||| ||||| || || || |||||| ||||||| | Sbjct 2026569 GGTCAGGGACCCAGAGAGCGTAGAACAGATCACGCGCGCGAACCTCCTCCTTGCCGTGGT 2026628 Query 66408 TTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGA 66467 | ||||| | ||| ||||| || || | || |||||||| || || ||||||||||| | Sbjct 2026629 TCTTGCGGAGGTCAAGGAAGTCGAAAACATCCGCATGCCAGGGCTCAAGGTAGATGGCAA 2026688 Query 66468 ACGAGCCCATACGTTTGCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACAC 66527 | | || || ||| |||||| ||||| ||||| || ||| || | || ||| Sbjct 2026689 AGGCACCAGGGCGCTTGTTGCCACCCTGGTCAACGTAACGGGCGGTCGCGTCGTAGGCAC 2026748 Query 66528 GCAACATCGGTACGAGCCCGTTAGATTTGCCATTGGTGCCGTCGATGGGGGATCCTCGTG 66587 | | ||| || |||| ||||| || | || ||||| || | ||| || || | Sbjct 2026749 GGAGCATGGGGACGATACCGTTGGAGTAACCGTTGGTTCCAGCAATGTACGAGCCCTTGG 2026808 Query 66588 CCCGTATATCGTGAACATTCAGACCAATACCACCGGCCGTCTTCGAGATGGCAGCACAA- 66646 | || || | ||||| | |||||||| ||||| || ||||| ||||| || ||| Sbjct 2026809 CACGAATGTTGTGAATGTGGAGACCAATGCCACCAGCAGTCTTGGAGATCTGGGCGCAAG 2026868 Query 66647 TC-GGCCACTGTCCGGAATATGCCGTCAATGGAGTCACCCTTGATGGTCAGGAGGTAGCA 66705 || | |||| | | |||||||| || ||||| |||| || | | |||| |||| Sbjct 2026869 TCTTGAGGGTGTC--GTAGATGCCGTCGATCGAGTCGTCCTTCATAGCGACGAGGAAGCA 2026926 Query 66706 TGAACTAAGTTGGGGTTTGGGTGTGGCGGCCGAGAAGAGGGTGGGTGTAGCGTGCGTAAA 66765 ||| | || || | ||| || | || ||||||||| || | |||||| || || Sbjct 2026927 TGACGACATCTGAGGGTGGGGAGTACCAGCGTTGAAGAGGGTCGGGGAAGCGTGAGTGAA 2026986 Query 66766 GTAATGGCGAGACATGTAATTGTACGTCTCGATGACAGCATCAATGTTTTCGCCATGAAT 66825 ||| | |||||| ||||||||||| ||||| || ||||| || || || || Sbjct 2026987 GTAGCGCTCGGACATGAGGTTGTACGTCTCAATGACCTTGTCGATGTTGTCACCGTGGAT 2027046 Query 66826 CCCGAGTGCACATCGCATCAGGAGGTATTGAGGCCGTTCGACCAGCCGATCCTTGATATG 66885 |||| | | ||||| | | || || || || ||| ||| | | | || | Sbjct 2027047 ACCGATGGAAACACGCATAATCATGTGCTGCGGACGCTCGGCCACCTTGCCGTCAATGCG 2027106 Query 66886 CATTAAGTAGGAGCGTTCCAGGGTCTTGATACCAAAGTA 66924 || | || ||||| || |||||||||| ||| ||||| Sbjct 2027107 CAAGAGATATGAGCGCTCGAGGGTCTTGAAACCGAAGTA 2027145 >seq11 Length=562504 Score = 156 bits (172), Expect = 3e-33 Identities = 345/515 (67%), Gaps = 7/515 (1%) Strand=Plus/Plus Query 61399 TTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAATTGG 61458 ||||| ||||||||||| || || | ||| ||| || || ||||| || |||| Sbjct 36750 TTCAAGGCCATCGAGACCATCCCCTGCATCAAGAAGAAGGCCGACTGGGCGCTCCGTTGG 36809 Query 61459 ATCACCAGTACAACGGCT--ACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGG 61516 || || || | ||| | |||| ||| || | | || || || | ||||| | Sbjct 36810 ATTTCC--GACGAGCGCTCGTCCTTTGCTGAGCGCCTCATTGCGTTCGCCGCCGTCGAAG 36867 Query 61517 GTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGC 61576 || | |||||| ||| ||||||||| | ||||| ||| | ||||| ||||| || |||| Sbjct 36868 GTATCTTTTTCTCTGGCTCGTTTGCCTCGATCTTCTGGCTCAAGAAGCGTGGCCTCATGC 36927 Query 61577 CCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGTGATTTTG 61636 |||| || || ||| ||| ||| | || || || |||||||| | || || |||| Sbjct 36928 CCGGCCTCACTTTCTCCAACGAGCTCATCTCGCGTGACGAGGGTCTTCACACCGACTTTG 36987 Query 61637 CTGTTTTGCTATTCAAACGCTATCTGGTGAATCGTCCGTCGGAGGAGCGTGTGGGTGAGA 61696 | | |||| |||| | |||| ||| ||| | | | | ||| Sbjct 36988 CCTGTCTGCTTTTCA---CCCATCTCCGCCGTCGCCCGCACCCCAACCTCATTGAGAAGA 37044 Query 61697 TTGTTCGTGAGGCGGTAACTATCGAACAGGAATTTCTGACTGACGCTTTGCCCGTCTCAC 61756 || | || ||||| || | || |||||||| || || || || || | ||||| || | Sbjct 37045 TTATCCGCGAGGCCGTCAAGATTGAACAGGAGTTCCTTACCGAGGCGCTCCCCGTGTCGC 37104 Query 61757 TCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGACCGTCTGT 61816 ||||||| ||||| ||| || |||| || || ||||| || || |||||||| ||| Sbjct 37105 TCATCGGTATGAACGCTGGTCTCATGTGCCAATACATTGAGTTCGTCGCCGACCGCCTGC 37164 Query 61817 TGGTCGATTTGGGTATGAAGCGGATCTATAATACGAAAAACCCATTTGATTTCATGGACA 61876 | |||| | || | | |||||| || ||| ||||| || || || ||||| | Sbjct 37165 TCGTCGCCCTTGGCAACGACAAGATCTACAACTCGACGAACCCCTTCGACTTTATGGAGA 37224 Query 61877 TGATTTCGCTGGATGGCAAGACGAATTTTTTCGAG 61911 |||| || ||| | |||||| | || || |||||| Sbjct 37225 TGATCTCTCTGCAAGGCAAGGCCAACTTCTTCGAG 37259 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397567864329920