Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Apiotrichum_20domesticum_20[genbank_20GCA_5F001599015.1_202016-03-
01] 28 sequences; 24,510,922 total letters
Query= NC_010671.1
Length=124279
Score E
Sequences producing significant alignments: (Bits) Value
seq1 255 5e-63
seq11 156 3e-33
>seq1
Length=4014173
Score = 255 bits (282), Expect = 5e-63
Identities = 625/939 (67%), Gaps = 10/939 (1%)
Strand=Plus/Plus
Query 65991 CCACAAACTTGGGAAGGGCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGG 66050
|||| ||| ||||||||||| || || ||||||||||| || | |||||| |||| |
Sbjct 2026212 CCACGAACGCGGGAAGGGCAATGGAGGCAAGGTTGCAGACGGCAACCTCGTCGGGAGAAG 2026271
Query 66051 TATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGAT 66110
||||||| || || ||||| || || | || ||||||| | ||| || |
Sbjct 2026272 AGTACTCGATGATCTCAGTGCAGAGGTTGGACGACTTGATAGTGCCCAGGTGCTGCTGGT 2026331
Query 66111 TACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGG 66170
|| |||||| ||| ||||||||||| | ||| | || || ||||| ||||
Sbjct 2026332 TAGACTTGCGGTTGGCAGCATCCTTGTAGAGGATGAAGGGGCCACCAGTCTCGGTCTGGG 2026391
Query 66171 ACTCAATGATGGCGTGCCAAAGAGCGCGTGCCTTCACCGTACGTACCGCCCTA-CCTTTG 66229
||||| ||||| ||| || | ||||| | || | | | |||| || |
Sbjct 2026392 CCTCAAGAATGGCAAACCAGAGCTTCTGGGCCTTGATGGT-CTTGCGACCCTTGCCCTCA 2026450
Query 66230 CGTTCGTAATGTTCGTAGAGGTGTTCGAAGGATTCACCCCAT--ACTTCGGACAGACATG 66287
|| ||||| | | ||| ||| || || ||| || | || |||| |||| |
Sbjct 2026451 CGCTCGTACTTCTGGTACAGGGTCTCAAAC--TTCTCCGAGTGAACGTCGGCAAGACCAG 2026508
Query 66288 GACACTTGTGTGGACACATCAGCGACCAATCACCATCCTGTTCTACACGACGCATAAATA 66347
| |||| | || ||||| || | ||| ||||| || || ||||| ||| || |
Sbjct 2026509 GGCACTCGGCGGGGCACATGAGGGTCCAGTCACCGTCGGCCTCGACACGCTTCATGAAGA 2026568
Query 66348 GATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCCGTGAT 66407
| ||||| | |||||| |||||||| ||||| || || || |||||| ||||||| |
Sbjct 2026569 GGTCAGGGACCCAGAGAGCGTAGAACAGATCACGCGCGCGAACCTCCTCCTTGCCGTGGT 2026628
Query 66408 TTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGA 66467
| ||||| | ||| ||||| || || | || |||||||| || || ||||||||||| |
Sbjct 2026629 TCTTGCGGAGGTCAAGGAAGTCGAAAACATCCGCATGCCAGGGCTCAAGGTAGATGGCAA 2026688
Query 66468 ACGAGCCCATACGTTTGCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACAC 66527
| | || || ||| |||||| ||||| ||||| || ||| || | || |||
Sbjct 2026689 AGGCACCAGGGCGCTTGTTGCCACCCTGGTCAACGTAACGGGCGGTCGCGTCGTAGGCAC 2026748
Query 66528 GCAACATCGGTACGAGCCCGTTAGATTTGCCATTGGTGCCGTCGATGGGGGATCCTCGTG 66587
| | ||| || |||| ||||| || | || ||||| || | ||| || || |
Sbjct 2026749 GGAGCATGGGGACGATACCGTTGGAGTAACCGTTGGTTCCAGCAATGTACGAGCCCTTGG 2026808
Query 66588 CCCGTATATCGTGAACATTCAGACCAATACCACCGGCCGTCTTCGAGATGGCAGCACAA- 66646
| || || | ||||| | |||||||| ||||| || ||||| ||||| || |||
Sbjct 2026809 CACGAATGTTGTGAATGTGGAGACCAATGCCACCAGCAGTCTTGGAGATCTGGGCGCAAG 2026868
Query 66647 TC-GGCCACTGTCCGGAATATGCCGTCAATGGAGTCACCCTTGATGGTCAGGAGGTAGCA 66705
|| | |||| | | |||||||| || ||||| |||| || | | |||| ||||
Sbjct 2026869 TCTTGAGGGTGTC--GTAGATGCCGTCGATCGAGTCGTCCTTCATAGCGACGAGGAAGCA 2026926
Query 66706 TGAACTAAGTTGGGGTTTGGGTGTGGCGGCCGAGAAGAGGGTGGGTGTAGCGTGCGTAAA 66765
||| | || || | ||| || | || ||||||||| || | |||||| || ||
Sbjct 2026927 TGACGACATCTGAGGGTGGGGAGTACCAGCGTTGAAGAGGGTCGGGGAAGCGTGAGTGAA 2026986
Query 66766 GTAATGGCGAGACATGTAATTGTACGTCTCGATGACAGCATCAATGTTTTCGCCATGAAT 66825
||| | |||||| ||||||||||| ||||| || ||||| || || || ||
Sbjct 2026987 GTAGCGCTCGGACATGAGGTTGTACGTCTCAATGACCTTGTCGATGTTGTCACCGTGGAT 2027046
Query 66826 CCCGAGTGCACATCGCATCAGGAGGTATTGAGGCCGTTCGACCAGCCGATCCTTGATATG 66885
|||| | | ||||| | | || || || || ||| ||| | | | || |
Sbjct 2027047 ACCGATGGAAACACGCATAATCATGTGCTGCGGACGCTCGGCCACCTTGCCGTCAATGCG 2027106
Query 66886 CATTAAGTAGGAGCGTTCCAGGGTCTTGATACCAAAGTA 66924
|| | || ||||| || |||||||||| ||| |||||
Sbjct 2027107 CAAGAGATATGAGCGCTCGAGGGTCTTGAAACCGAAGTA 2027145
>seq11
Length=562504
Score = 156 bits (172), Expect = 3e-33
Identities = 345/515 (67%), Gaps = 7/515 (1%)
Strand=Plus/Plus
Query 61399 TTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAATTGG 61458
||||| ||||||||||| || || | ||| ||| || || ||||| || ||||
Sbjct 36750 TTCAAGGCCATCGAGACCATCCCCTGCATCAAGAAGAAGGCCGACTGGGCGCTCCGTTGG 36809
Query 61459 ATCACCAGTACAACGGCT--ACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGG 61516
|| || || | ||| | |||| ||| || | | || || || | ||||| |
Sbjct 36810 ATTTCC--GACGAGCGCTCGTCCTTTGCTGAGCGCCTCATTGCGTTCGCCGCCGTCGAAG 36867
Query 61517 GTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGC 61576
|| | |||||| ||| ||||||||| | ||||| ||| | ||||| ||||| || ||||
Sbjct 36868 GTATCTTTTTCTCTGGCTCGTTTGCCTCGATCTTCTGGCTCAAGAAGCGTGGCCTCATGC 36927
Query 61577 CCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGTGATTTTG 61636
|||| || || ||| ||| ||| | || || || |||||||| | || || ||||
Sbjct 36928 CCGGCCTCACTTTCTCCAACGAGCTCATCTCGCGTGACGAGGGTCTTCACACCGACTTTG 36987
Query 61637 CTGTTTTGCTATTCAAACGCTATCTGGTGAATCGTCCGTCGGAGGAGCGTGTGGGTGAGA 61696
| | |||| |||| | |||| ||| ||| | | | | |||
Sbjct 36988 CCTGTCTGCTTTTCA---CCCATCTCCGCCGTCGCCCGCACCCCAACCTCATTGAGAAGA 37044
Query 61697 TTGTTCGTGAGGCGGTAACTATCGAACAGGAATTTCTGACTGACGCTTTGCCCGTCTCAC 61756
|| | || ||||| || | || |||||||| || || || || || | ||||| || |
Sbjct 37045 TTATCCGCGAGGCCGTCAAGATTGAACAGGAGTTCCTTACCGAGGCGCTCCCCGTGTCGC 37104
Query 61757 TCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGACCGTCTGT 61816
||||||| ||||| ||| || |||| || || ||||| || || |||||||| |||
Sbjct 37105 TCATCGGTATGAACGCTGGTCTCATGTGCCAATACATTGAGTTCGTCGCCGACCGCCTGC 37164
Query 61817 TGGTCGATTTGGGTATGAAGCGGATCTATAATACGAAAAACCCATTTGATTTCATGGACA 61876
| |||| | || | | |||||| || ||| ||||| || || || ||||| |
Sbjct 37165 TCGTCGCCCTTGGCAACGACAAGATCTACAACTCGACGAACCCCTTCGACTTTATGGAGA 37224
Query 61877 TGATTTCGCTGGATGGCAAGACGAATTTTTTCGAG 61911
|||| || ||| | |||||| | || || ||||||
Sbjct 37225 TGATCTCTCTGCAAGGCAAGGCCAACTTCTTCGAG 37259
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397567864329920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |