Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20gamsii_20[genbank_20GCA_5F001600315.1_202016-03-01] 29 sequences; 24,609,388 total letters Query= AAMG01000538.1 Length=248 Score E Sequences producing significant alignments: (Bits) Value seq22 114 2e-23 >seq22 Length=1986 Score = 114 bits (126), Expect = 2e-23 Identities = 172/243 (71%), Gaps = 16/243 (7%) Strand=Plus/Plus Query 7 CTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACCT 66 |||||| ||||||||||| ||||| || |||||||| ||||| | || ||| | ||| Sbjct 16 CTTCCAGCACCGGGCAGGTGTCAGACCCTATACATCATGTTACCAT-TTAGCAGAGTCCT 74 Query 67 GTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACGT 126 ||||||| ||||||||||| ||| ||||| | || ||| || | Sbjct 75 AAGTTTTTATTAAACAGTCGCAACCCCCTATTTTGTGACACCT----------AA----T 120 Query 127 CGTTCACCAGCAGT-GGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCT 185 | || | | | | || || | || |||||||||||| | | ||||||||||| ||||| Sbjct 121 CATTAAAAATAATTAGGTACTCTTTATCCCGAAGTTACAGAGTCATTTTGCCGAGTTCCT 180 Query 186 TAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACG 245 | | | ||||| | | | ||||||| | ||| |||| | ||||||||||||||| | Sbjct 181 TCAATATAGTTCTCTCATTCACCTTAGTCTACTCGACCTATCTACCTGTGTCGGTTTAGG 240 Query 246 GTA 248 ||| Sbjct 241 GTA 243 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694399804917