Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20gamsii_20[genbank_20GCA_5F001600315.1_202016-03-01] 29 sequences; 24,609,388 total letters Query= AAMG01000811.1 Length=502 Score E Sequences producing significant alignments: (Bits) Value seq29 187 7e-45 >seq29 Length=1025 Score = 187 bits (206), Expect = 7e-45 Identities = 254/354 (72%), Gaps = 28/354 (8%) Strand=Plus/Minus Query 7 CGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCATGTGGTT 66 |||||| |||||| ||||||||||||||||| | ||||||||||||||||||||||| Sbjct 388 CGCAAGATTGAAATTCAAAGGAATTGACGGGAGTCTACACAAGCGGTGGAGCATGTGGTT 329 Query 67 TAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCTCTAGAGA 126 |||||||| ||||| ||||||||||||| ||||| || | || | Sbjct 328 TAATTCGATAATACGCGCAGAACCTTACCAACTCTTG-------CTAA-----TTAAATT 281 Query 127 TAGAGGTTTCCCCTTCGGGGGACAGAGTGACAGGTGATGCATGGTTGTCGTCAGCTCGTG 186 | | ||| || | ||||| | ||||||| ||||||||||||||| Sbjct 280 AAAAAATTT---ATT-----TTAATTTAAACAGGCGTTGCATGGCTGTCGTCAGCTCGTG 229 Query 187 TCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTAAGCTTAGTTGCCA---- 242 | |||| ||||| |||||| ||| |||||||||||||| || |||||||| | Sbjct 228 TTGTGAAATGTTTGGTTAAATCCTTTAACGAGCGCAACCCCTATTATTAGTTGCTAATTT 169 Query 243 ---TCATTA-AGTTGGGCACTCTAAGTTGACTGCCGGTGACAAACCGGAGGAAGGTGGGG 298 | |||| | ||||||||| | || | ||| | | |||||||| ||| Sbjct 168 ATTTTATTATATAAAAGCACTCTAATAAAAATGTCAATGATAGGTTGAAGGAAGGTAGGG 109 Query 299 ACGACGTCAAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATG 352 | |||||||| || ||||| ||||||||| |||||||||||||||||||||||| Sbjct 108 ATGACGTCAAGTCTTCATGGCCCTTATGAGTTGGGCTACACACGTGCTACAATG 55 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1503999563840