Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20gamsii_20[genbank_20GCA_5F001600315.1_202016-03-01] 29 sequences; 24,609,388 total letters Query= AAMG01001213.1 Length=600 Score E Sequences producing significant alignments: (Bits) Value seq22 131 6e-28 >seq22 Length=1986 Score = 131 bits (144), Expect = 6e-28 Identities = 181/252 (72%), Gaps = 1/252 (0%) Strand=Plus/Plus Query 56 ATTCGGAGTTTGGTTGATTTCGGTAAGCTTGTGGGCCCCCTAGACCATCCAGTGCTCTAC 115 ||||||||||| || ||| ||||| || | ||||||||| || |||||||||| Sbjct 794 ATTCGGAGTTTCCAAGAGTTCAGTAAGTTTTTACGCCCCCTAGCTCAATGAGTGCTCTAC 853 Query 116 CTCCGGGAAGAAACACGCGACGCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCAC 175 | || || | | | ||| || | ||| |||||| ||| ||||||||||| | Sbjct 854 C-CCAAAAAAAGATTTTAAATGCTCTACTTCAATAGATTTCGCGGAAAACCAGCTATCTC 912 Query 176 GAAGTTTGATTGGCCTTTCACCCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGT 235 ||||||||| ||||||||| |||| ||||| ||||| || | ||| | || || || Sbjct 913 CGAGTTTGATTAGCCTTTCACTCCTAACCACAAATCATCTCCATATTTTGCCACATATGT 972 Query 236 GGGTTCGGTCCTCCACGCGGTCTTACCCGCGCTTCAACCTGCCCATGGATAGATCACTTC 295 | ||||| ||||||| || ||||| ||||| ||| ||||| ||||||||| Sbjct 973 GAGTTCGATCCTCCAAATAGTTTTACCTATTTTTCAATCTGTTCATGGTTAGATCACTCG 1032 Query 296 GCTTCGGGTCTT 307 | |||||||||| Sbjct 1033 GTTTCGGGTCTT 1044 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1817599472896