Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20gamsii_20[genbank_20GCA_5F001600315.1_202016-03-01] 29 sequences; 24,609,388 total letters Query= AAMG01001291.1 Length=420 Score E Sequences producing significant alignments: (Bits) Value seq22 87.8 4e-15 >seq22 Length=1986 Score = 87.8 bits (96), Expect = 4e-15 Identities = 246/359 (69%), Gaps = 24/359 (7%) Strand=Plus/Plus Query 46 GTTCGGTCCTCCAGTTAGTAGTTACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCC 105 ||||| ||||||| |||| ||||| | |||||| ||| ||| || |||||| | | Sbjct 975 GTTCGATCCTCCAAATAGTT-TTACCTATT-TTTCAATCTGTTCAT-GGTTAGATCACTC 1031 Query 106 GGTTTTCGGGTCTATTTCCCAGCGACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGC 165 ||||| ||||||| || | |||| | | | ||| ||| | ||| |||||| Sbjct 1032 GGTTT-CGGGTCTTATTTATATA-ACTATTCAGCTTTTTAAAACTTGATTTAT-CTACGC 1088 Query 166 CTCCCCTATTCGGTTAAGCTTTGCCACTGAAAATAAG-TCGCTGACCCATTATACAAAAG 224 || | ||| |||||||| || | | ||||||| | |||| |||||||| |||||| Sbjct 1089 CTACTTTATAAAATTAAGCTT-GCTA-TAAAAATAAACTTGCTGGCCCATTATGCAAAAG 1146 Query 225 GTACGCAGTCACCC--AACAAAGTGGGCTCCCACTGCTTGTACGCATACGGTTTCAGGAT 282 |||| | ||||| || ||||| ||| | || || | ||| |||||| || Sbjct 1147 GTACACTGTCACTTTAAAAAAAGT----TCCAATTGATTATTAACATTAAATTTCAGAAT 1202 Query 283 CTATTTCACTCCCCTCTCCGGGGTTCTTTT-CGCCTTTCCCTCACGGTACTAGTTCACTA 341 ||||||| | || |||||||| | ||||||| | || ||||| |||||||| Sbjct 1203 -TATTTCAAAC-----TCAAAAGTTCTTTTTCACCTTTCCTTTACAGTACTTGTTCACTA 1256 Query 342 TCGGTCAGTCAGTAGTATTTAGCCTTGGAGGATGGTCCCCCCATATTCAGACAAAGTTT 400 ||| ||| | | | || || || |||| |||| |||| ||||||| | |||| || Sbjct 1257 TCGATCATTAATTTTTA-CAAGGTTTTGAGGGTGGTTCCCCAATATTCA-AAAAAGATT 1313 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1241599639936