Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Apiotrichum_20gamsii_20[genbank_20GCA_5F001600315.1_202016-03-01]
29 sequences; 24,609,388 total letters
Query= AAMG01001291.1
Length=420
Score E
Sequences producing significant alignments: (Bits) Value
seq22 87.8 4e-15
>seq22
Length=1986
Score = 87.8 bits (96), Expect = 4e-15
Identities = 246/359 (69%), Gaps = 24/359 (7%)
Strand=Plus/Plus
Query 46 GTTCGGTCCTCCAGTTAGTAGTTACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCC 105
||||| ||||||| |||| ||||| | |||||| ||| ||| || |||||| | |
Sbjct 975 GTTCGATCCTCCAAATAGTT-TTACCTATT-TTTCAATCTGTTCAT-GGTTAGATCACTC 1031
Query 106 GGTTTTCGGGTCTATTTCCCAGCGACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGC 165
||||| ||||||| || | |||| | | | ||| ||| | ||| ||||||
Sbjct 1032 GGTTT-CGGGTCTTATTTATATA-ACTATTCAGCTTTTTAAAACTTGATTTAT-CTACGC 1088
Query 166 CTCCCCTATTCGGTTAAGCTTTGCCACTGAAAATAAG-TCGCTGACCCATTATACAAAAG 224
|| | ||| |||||||| || | | ||||||| | |||| |||||||| ||||||
Sbjct 1089 CTACTTTATAAAATTAAGCTT-GCTA-TAAAAATAAACTTGCTGGCCCATTATGCAAAAG 1146
Query 225 GTACGCAGTCACCC--AACAAAGTGGGCTCCCACTGCTTGTACGCATACGGTTTCAGGAT 282
|||| | ||||| || ||||| ||| | || || | ||| |||||| ||
Sbjct 1147 GTACACTGTCACTTTAAAAAAAGT----TCCAATTGATTATTAACATTAAATTTCAGAAT 1202
Query 283 CTATTTCACTCCCCTCTCCGGGGTTCTTTT-CGCCTTTCCCTCACGGTACTAGTTCACTA 341
||||||| | || |||||||| | ||||||| | || ||||| ||||||||
Sbjct 1203 -TATTTCAAAC-----TCAAAAGTTCTTTTTCACCTTTCCTTTACAGTACTTGTTCACTA 1256
Query 342 TCGGTCAGTCAGTAGTATTTAGCCTTGGAGGATGGTCCCCCCATATTCAGACAAAGTTT 400
||| ||| | | | || || || |||| |||| |||| ||||||| | |||| ||
Sbjct 1257 TCGATCATTAATTTTTA-CAAGGTTTTGAGGGTGGTTCCCCAATATTCA-AAAAAGATT 1313
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1241599639936
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |