Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20gamsii_20[genbank_20GCA_5F001600315.1_202016-03-01] 29 sequences; 24,609,388 total letters Query= AAMG01002180.1 Length=500 Score E Sequences producing significant alignments: (Bits) Value seq29 253 6e-65 >seq29 Length=1025 Score = 253 bits (280), Expect = 6e-65 Identities = 265/342 (77%), Gaps = 6/342 (2%) Strand=Plus/Minus Query 161 GCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACC 220 |||| |||||| ||||||||| ||| | ||||||| |||| ||| |||| | Sbjct 1018 GCGTAAGATTAGGTAGTTGGTAGTTTAAAAGACTACCAAGCCGACTATCTTTAGCTGGTT 959 Query 221 TGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGC 280 ||| || ||||| |||||||||| |||||||||||| ||||||| | ||||||| Sbjct 958 TGAAAGAATGATCAGCCACATTGGGACTGAGACACGGCCCAAACT-TTTTTAAAGGCAGC 900 Query 281 AGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAA 340 |||||||||| ||| |||||| || ||||| |||| |||||| || ||||| |||||| Sbjct 899 AGTGGGGAATTTTGGACAATGAGCGAAAGCTTGATCCAGCAATACCAAGTGAGTGATGAA 840 Query 341 GGC-CTTCGGGTCGTAAAGCTCTGTCCTCAAGGAAGATAATGACGGTACTTGAGGAGGAA 399 ||| | ||| |||||||||| || | ||||| || |||||| |||||| | | ||| Sbjct 839 GGCTAATTAGGTTGTAAAGCTCTTTCATTAAGGAGGAAAATGACAGTACTTAAAAAAGAA 780 Query 400 GCCCCGGCTAACTA--CGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCG 457 | |||||||| || |||||||||||||||||||||||| || || ||| |||| || Sbjct 779 GTTCCGGCTAA-TACCCGTGCCAGCAGCCGCGGTAATACGGGAGGAGCGAGCATTATTCG 721 Query 458 GAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGT 499 |||| | | |||||||||||| ||||||||||| |||||| Sbjct 720 GAATGA-TTAGGCGTAAAGGGTTTGTAGGTGGTTTTTTAAGT 680 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1497599565696