Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20gamsii_20[genbank_20GCA_5F001600315.1_202016-03-01] 29 sequences; 24,609,388 total letters Query= AAMG01002193.1 Length=560 Score E Sequences producing significant alignments: (Bits) Value seq22 154 5e-35 >seq22 Length=1986 Score = 154 bits (170), Expect = 5e-35 Identities = 312/453 (69%), Gaps = 15/453 (3%) Strand=Plus/Minus Query 34 AGACCCGAAACCAAGTGATCTACCCATGGCCAGGATGAAGGTGCGGTAACACGCCCTGGA 93 |||||||||||| ||||||||| ||||| ||| |||| ||||| || |||| Sbjct 1043 AGACCCGAAACCGAGTGATCTAACCATGAACAGATTGAAAAATAGGTAAAACTATTTGGA 984 Query 94 GGTCCGAACCCACTAATGTTGAAAAATTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCT 153 || ||||| ||| |||| | ||||| || ||||| ||||| |||| |||||||||| Sbjct 983 GGATCGAACTCACATATGTGGCAAAATATGGAGATGATTTGTGGTTAGGAGTGAAAGGCT 924 Query 154 AAACAAACTTGGAAATAGCTGGTTCTCTCCGAAAACTATTTAGGTAGTGCCTCAAGTATC 213 || |||||| ||| |||||||||| || ||||| ||||| | |||| || | | ||| Sbjct 923 AATCAAACTCGGAGATAGCTGGTTTTCCGCGAAATCTATTGAAGTAGAGCATTTAAAATC 864 Query 214 ACCATCGGGGGTAGAGCACTGTTATGGCTAGGGGGTCATTGCGACTTACCAAACCATTGC 273 | ||||||||||||| | ||||||||| | | |||||| ||| ||| Sbjct 863 TTTTTTTGGGGTAGAGCACTCATTGAGCTAGGGGG-CGTAAAAACTTACTGAACTCTTGG 805 Query 274 AAACTCCGAATGCGCATCA--GT--TTTACCGCGGGAGTGAGGGCATGGGTGCTAAGGTC 329 ||||||||||| | | | || |||| || || | || ||||||||| Sbjct 804 AAACTCCGAATACAAAAAAACGTAATTTA----AATAGACAGACATTAGGCGCTAAGGTC 749 Query 330 CGTGCCCGAGAGGAGAAGAATCCGGACT-ATCAGCTAAGGCCCCGAAATGACA-GCTAAG 387 | ||||| || | || || | ||| ||||||| | | |||| | | ||||| Sbjct 748 TTATGTCAAGAGGGAAACAGCCCAGATTGATC-GCTAAGGTCTCTAAATAATATTCTAAG 690 Query 388 TTAAACTAACGAAGTCTGATTGCTAAGACAGCTAGGATGTTGGCTTGGAAGCAGCCATTC 447 | ||| || ||||| | | ||| | || | || |||||||||||||||| || Sbjct 689 TGAAA--AAGGAAGTGAAAAAATAATTACAACCAGTAGGTAGGCTTGGAAGCAGCCA-TC 633 Query 448 ATTTAAAGAGTGCGTAACAGCTCACTAGTCGAG 480 |||||||| |||||| |||||| | ||| || Sbjct 632 CTTTAAAGAAAGCGTAATAGCTCATTGGTCTAG 600 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1689599510016