Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20gamsii_20[genbank_20GCA_5F001600315.1_202016-03-01] 29 sequences; 24,609,388 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq5 255 5e-63 seq6 174 1e-38 seq3 87.8 1e-12 >seq5 Length=2501492 Score = 255 bits (282), Expect = 5e-63 Identities = 626/938 (67%), Gaps = 12/938 (1%) Strand=Plus/Plus Query 65993 ACAAACTTGGGAAGGGCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTA 66052 |||||| || ||||||| || || ||||||||||| || | |||||| || || | Sbjct 908743 ACAAACGCAGGGAGGGCAATCGAGGCCAGGTTGCAGACGGCGACCTCGTCGGGGGCCGAG 908802 Query 66053 TACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTA 66112 ||||||| || || ||||| || || | |||||||| | | ||| || || Sbjct 908803 TACTCGATGATCTCAGTGCAGAGGTTGGACGACTTGATGGTGCCGAGGTGCTGCTGGTTG 908862 Query 66113 CTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGAC 66172 ||||| ||| || |||||||| | |||| | ||| || ||||| |||| | Sbjct 908863 GACTTGCTGTTGGCAGCGTCCTTGTAGAGCATGAAGGGACCACCAGTCTCGGTCTGGGCC 908922 Query 66173 TCAATGATGGCGTGCCAAAGAGCGCGTGCCTTCACCGTACGTACCGCCCTACCTTTGCGT 66232 || | |||||| ||| || | ||||| | || | | | |||| | | Sbjct 908923 TCGAGGATGGCAAACCAGAGCTTCTGGGCCTTGATGGT-CTTGCGACCCTTGCCGGCAGC 908981 Query 66233 -TCGTAATGTTCGTAGAGGTGTTCGAAGGATTCACCCCAT--ACTTCGGACAGACATGGA 66289 ||||| |||||||| | || || | | || | || |||| |||| || Sbjct 908982 CTCGTAGCTCTCGTAGAGCTTCTCAAAC--TCCTCCGAGTGGACGTCGGCGAGACCGGGG 909039 Query 66290 CACTTGTGTGGACACATCAGCGACCAATCACCATCCTGTTCTACACGACGCATAAATAGA 66349 |||| | || ||||| || | ||| || || || || ||||| ||| || || Sbjct 909040 CACTCGGCAGGGCACATGAGGGTCCAGTCGCCGTCGGCCTCGACACGCTTCATGAAAAGG 909099 Query 66350 TCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCCGTGATTT 66409 || || |||||||| ||||||||||| || || || || |||||| ||||||| || Sbjct 909100 TCGGGGATCCAGAGAGCGTAGAAGAGGTCACGAGCGCGAACCTCCTCCTTGCCGTGGTTC 909159 Query 66410 TTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAAC 66469 ||||| | ||||||||| || || | |||||| ||||| || || ||||||||||||||| Sbjct 909160 TTGCGGAGGTCGAGGAAGTCGAACACGTCGGCGTGCCAAGGCTCGAGGTAGATGGCGAAC 909219 Query 66470 GAGCCCATACGTTTGCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGC 66529 | || || ||| ||| || ||||||||||| || || || | || | || Sbjct 909220 GCACCAGGGCGCTTGTTGCCTCCCTGGTCGACGTAACGGGCAGTGGCGTCGTAGGCGCGG 909279 Query 66530 AACATCGGTACGAGCCCGTTAGATTTGCCATTGGTGCCGTCGATGGGGGATCCTCGTGCC 66589 | ||| || |||| ||||| || | ||| ||||| ||| | ||| || || || Sbjct 909280 AGCATGGGGACGATACCGTTCGAGTAGCCGTTGGTACCGGCAATGTACGAGCCCTTGGCG 909339 Query 66590 CGTATATCGTGAACATTCAGACCAATACCACCGGCCGTCTTCGAGATGGCAGCACA-ATC 66648 || || | ||| | | ||||| |||||||| || ||||| ||||| ||| || || Sbjct 909340 CGAATGTTGTGGATGTGGAGACCGATACCACCAGCAGTCTTGGAGATCTGAGCGCAGGTC 909399 Query 66649 -GGCCACTGTCCGGAATATGCCGTCAATGGAGTCACCCTTGATGGTCAGGAGGTAGCATG 66707 | |||| | | ||||||||||| ||||| |||| |||| | ||| |||| | Sbjct 909400 TTGAGGGTGTC--GTAGATGCCGTCAATCGAGTCGTCCTTCATGGCGACGAGAAAGCACG 909457 Query 66708 AACTAAGTTGGGGTTTGGGTGTGGCGGCCGAGAAGAGGGTGGGTGTAGCGTGCGTAAAGT 66767 | | ||||| | ||| || |||| ||||||||| || | ||||| || |||| Sbjct 909458 ACGACATCTGGGGGTGGGGGGTACCGGCGTTGAAGAGGGTTGGCGACGCGTGGGTGAAGT 909517 Query 66768 AATGGCGAGACATGTAATTGTACGTCTCGATGACAGCATCAATGTTTTCGCCATGAATCC 66827 || | |||||| |||||||| |||| || |||||||| ||||| || || | Sbjct 909518 AACGCTCCGACATGAGGTTGTACGTGTCGAGCACCTTCTCAATGTTGTCGCCGTGGATAC 909577 Query 66828 CGAGTGC-ACATCGCATCAGGAGGTATTGAGGCCGTTCGACCAGCCGATCCTTGATATGC 66886 | | || ||| ||||| | | || || || || ||| | | | | ||||| || Sbjct 909578 CAATAGCGACA-CGCATGATCATGTGCTGGGGACGCTCGGCGACCTTGCCGTTGATGCGC 909636 Query 66887 ATTAAGTAGGAGCGTTCCAGGGTCTTGATACCAAAGTA 66924 | | ||| ||||| || |||||||||| |||||||| Sbjct 909637 AGGAGGTACGAGCGCTCGAGGGTCTTGAAGCCAAAGTA 909674 >seq6 Length=2185627 Score = 174 bits (192), Expect = 1e-38 Identities = 457/687 (67%), Gaps = 9/687 (1%) Strand=Plus/Plus Query 61228 TCGGACGGTATCGTCAATGAGAATTTATTGGAACGTTTCGCGCAG-GAGGTGCAAGTGTC 61286 || ||||| |||||||| ||||| | | || |||||| || | |||||||| | | Sbjct 94397 TCTGACGGCATCGTCAACGAGAACCTTGTCGAGCGTTTCT-GCGGTGAGGTGCAGATTCC 94455 Query 61287 GGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGATGTA 61346 ||||| ||||||||||||||||| |||||||| | |||||||||| ||| Sbjct 94456 CGAGGCCAAGACATTCTACGGCTTCCAGATCATGATGGAGAACATTCACTCGGAGACGTA 94515 Query 61347 CAGTGTTCTCATCGATACGTACATCAGGGAGCGGGCGGAACGTGAACGATTGTTCAATGC 61406 | | |||||||| |||||||| | || ||| || | ||||||| || Sbjct 94516 CTCGCTCCTCATCGACACGTACATTCGCGACAATGCGCGCCGCCACTACCTGTTCAACGC 94575 Query 61407 CATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAATTGGATCACC-A 61465 || |||| || || | ||| ||| || || ||||| |||| ||||| | | Sbjct 94576 GATTGAGAACATTCCCTGCATCAAGAAGAAGGCCGACTGGGCGCTCAACTGGATTTCTGA 94635 Query 61466 GTACAACGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGGGTGTATTTT 61525 | ||| | | |||| || || | | || ||||| | |||||||| | || | Sbjct 94636 CAAGAACTCGT-CGTTTGCCGAGCGTCTTATCGCCTTTGCCGCCGTCGAGGGCATCTTCT 94694 Query 61526 TCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCGGTCTGA 61585 || || ||||||||| | ||||| ||| | ||||| || || || ||||||||||| | Sbjct 94695 TCTCGGGCTCGTTTGCCTCCATCTTCTGGCTCAAGAAGCGCGGTCTCATGCCCGGTCTCA 94754 Query 61586 CCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGTGATTTTGCTGTTTTGC 61645 ||||| ||| ||| | || || ||||||||||| | || || ||||| ||| Sbjct 94755 CCTTCTCCAACGAGCTCATCTCGCGCGACGAGGGTCTCCACACCGACTTTGCCTGCCTGC 94814 Query 61646 TATTCAAACGCTATCTGGTGAATCG-TCCGTCGGAGGAGCGTGTGGGTGAGATTGTTCGT 61704 | |||| | | || | | | || | || | | | ||| | | || Sbjct 94815 TCTTCACCCACC-TCCGCCGCCGCCCTCACCCAGAC-ACCATCAACATGA--TCATCCGC 94870 Query 61705 GAGGCGGTAACTATCGAACAGGAATTTCTGACTGACGCTTTGCCCGTCTCACTCATCGGC 61764 ||||| || | ||||| || || || || || ||||| | |||||||| ||||||||| Sbjct 94871 GAGGCCGTTGCGATCGAGCAAGAGTTCCTCACAGACGCCCTCCCCGTCTCGCTCATCGGC 94930 Query 61765 ATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGACCGTCTGTTGGTCGAT 61824 ||||| | || |||| ||||| ||||| ||||| |||||||| ||| | |||| Sbjct 94931 ATGAACGCCGCGCTCATGTGCCAGTACATTGAGTTTGTCGCCGACCGCCTGCTCGTCGCG 94990 Query 61825 TTGGGTATGAAGCGGATCTATAATACGAAAAACCCATTTGATTTCATGGACATGATTTCG 61884 | || | | ||| || || | ||||||||| || || ||||| ||||| ||| Sbjct 94991 CTCGGCAACGACAAGATTTACAACTCTGCAAACCCATTCGACTTTATGGAGATGATCTCG 95050 Query 61885 CTGGATGGCAAGACGAATTTTTTCGAG 61911 || | |||||| | || || |||||| Sbjct 95051 CTCCAGGGCAAGGCAAACTTCTTCGAG 95077 >seq3 Length=3502833 Score = 87.8 bits (96), Expect = 1e-12 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 61510 GTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGA 61569 |||||||| | || || ||| ||||| || || ||||| ||||||||||| || ||| Sbjct 1064912 GTCGAGGGGATCTTCTTTTCTGGCTCGTTCGCTGCCATCTTCTGGTTGAAGAAGCGCGGA 1064971 Query 61570 CTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGT 61629 || |||| || || |||||| ||| ||| | || || ||||||||||||| ||| Sbjct 1064972 CTCATGCGTGGCCTCACCTTCTCCAACGAGCTCATCTCGCGCGACGAGGGCACACATACC 1065031 Query 61630 GATTTTGC 61637 || ||||| Sbjct 1065032 GACTTTGC 1065039 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397567859484560