Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Apiotrichum_20gracile_20[genbank_20GCA_5F001600335.1_202016-03-01]
17 sequences; 24,114,851 total letters
Query= AAMG01002120.1
Length=347
Score E
Sequences producing significant alignments: (Bits) Value
seq2 122 2e-25
>seq2
Length=4873547
Score = 122 bits (134), Expect = 2e-25
Identities = 196/273 (72%), Gaps = 14/273 (5%)
Strand=Plus/Plus
Query 50 TCACCGTGGTTGCCCTCGGCGTTGTTCAGGCCGAACAGGCGCTCCTTGATGAT----TCC 105
|| |||||||| |||| || | ||| ||| ||||| |||||||||| || |||
Sbjct 3196599 TCGCCGTGGTTTCCCTGCTCGCCGGTCACGCCAAACAGACGCTCCTTGAGAATGGGGTCC 3196658
Query 106 ATCGCGCTCGTTCCACAGGGCCAGGCCCAGGCACCAACGTTGCGCCTTGTCACTGAACCC 165
| || |||||||||| || ||| | |||| || || ||||| || ||
Sbjct 3196659 TT---GC-CGTTCCACAGCGCGAGGGTGAAGCACAGGCGCTGGTGGTTGTCCGAGATACC 3196714
Query 166 CGCCAGGCCGTCCTCGCCCCAACGGTAGGCGCGGCTGCGTG--CATGGTCATGGGGGAAG 223
|||| |||||||||||||| ||||| |||||||| | || ||| ||| |||||
Sbjct 3196715 TGCCATACCGTCCTCGCCCCAGCGGTACGCGCGGCT-CTTGGCCAT-GTCGAACGGGAAC 3196772
Query 224 TAGGCCCAGGCGTCGCCATCGGCGCTGTAGTCTTCGCGCACCGTGCCCCATTGGCGTTCG 283
|| ||| |||||||||| ||| |||||||| ||||| || |||||||| ||||| ||
Sbjct 3196773 GAGTTCCACGCGTCGCCATTGGCACTGTAGTCCTCGCGGACAGTGCCCCACTGGCGCTCA 3196832
Query 284 CTCAGGTAGGGGCCCCACTCGC-GCCAGCGCTC 315
| ||| ||||||||| ||| |||| ||||
Sbjct 3196833 GAGACGTACGGGCCCCAC-CGCTTCCAGTGCTC 3196864
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1007999828640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |