Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20gracile_20[genbank_20GCA_5F001600335.1_202016-03-01] 17 sequences; 24,114,851 total letters Query= AAMG01002120.1 Length=347 Score E Sequences producing significant alignments: (Bits) Value seq2 122 2e-25 >seq2 Length=4873547 Score = 122 bits (134), Expect = 2e-25 Identities = 196/273 (72%), Gaps = 14/273 (5%) Strand=Plus/Plus Query 50 TCACCGTGGTTGCCCTCGGCGTTGTTCAGGCCGAACAGGCGCTCCTTGATGAT----TCC 105 || |||||||| |||| || | ||| ||| ||||| |||||||||| || ||| Sbjct 3196599 TCGCCGTGGTTTCCCTGCTCGCCGGTCACGCCAAACAGACGCTCCTTGAGAATGGGGTCC 3196658 Query 106 ATCGCGCTCGTTCCACAGGGCCAGGCCCAGGCACCAACGTTGCGCCTTGTCACTGAACCC 165 | || |||||||||| || ||| | |||| || || ||||| || || Sbjct 3196659 TT---GC-CGTTCCACAGCGCGAGGGTGAAGCACAGGCGCTGGTGGTTGTCCGAGATACC 3196714 Query 166 CGCCAGGCCGTCCTCGCCCCAACGGTAGGCGCGGCTGCGTG--CATGGTCATGGGGGAAG 223 |||| |||||||||||||| ||||| |||||||| | || ||| ||| ||||| Sbjct 3196715 TGCCATACCGTCCTCGCCCCAGCGGTACGCGCGGCT-CTTGGCCAT-GTCGAACGGGAAC 3196772 Query 224 TAGGCCCAGGCGTCGCCATCGGCGCTGTAGTCTTCGCGCACCGTGCCCCATTGGCGTTCG 283 || ||| |||||||||| ||| |||||||| ||||| || |||||||| ||||| || Sbjct 3196773 GAGTTCCACGCGTCGCCATTGGCACTGTAGTCCTCGCGGACAGTGCCCCACTGGCGCTCA 3196832 Query 284 CTCAGGTAGGGGCCCCACTCGC-GCCAGCGCTC 315 | ||| ||||||||| ||| |||| |||| Sbjct 3196833 GAGACGTACGGGCCCCAC-CGCTTCCAGTGCTC 3196864 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1007999828640