Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20gracile_20[genbank_20GCA_5F001600335.1_202016-03-01] 17 sequences; 24,114,851 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq5 297 2e-75 seq4 141 7e-29 seq2 87.8 1e-12 >seq5 Length=3690501 Score = 297 bits (328), Expect = 2e-75 Identities = 631/931 (68%), Gaps = 16/931 (2%) Strand=Plus/Plus Query 66002 GGAAGGGCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACA 66061 || ||||||| || || ||||||||||| || | |||||| || || | ||||||| | Sbjct 3209956 GGGAGGGCAATCGAGGCAAGGTTGCAGACGGCAACCTCGTCGGGGGCAGAGTACTCGATA 3210015 Query 66062 ATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGA 66121 || || ||||| || || | |||||||| | | ||| || || |||||| Sbjct 3210016 ATCTCAGTGCAGAGGTTGGACGACTTGATGGTGCCGAGGTGCTGCTGGTTGGACTTGCGG 3210075 Query 66122 TTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGATG 66181 ||| || |||||||| | |||| | || || |||||| |||| ||| | ||| Sbjct 3210076 TTGGCAGCGTCCTTGTAGAGCATGAAGGGGCCACCAGTCTCAGTCTGGGCCTCGAGAATG 3210135 Query 66182 GCGTGCCAAAGAGCGCGTGCCTTCACCGTACGTACCGCCCTA-CCTTTGCGTTCGTAATG 66240 || ||| || | ||||| | || | | | ||||| || | || ||||| | Sbjct 3210136 GCAAACCAGAGCTTCTGAGCCTTGATAGT-CTTGCGGCCCTTGCCCTCACGCTCGTACTT 3210194 Query 66241 TTCGTAGAGGTGTTCGAAGGATTCACCCCATACTTCGGACAGACATGGACACTTGTGTGG 66300 ||||||||| || || ||| || ||||| || | || || | | || Sbjct 3210195 TTCGTAGAGAGCCTCAAACTCCTCAGAGTGGACGTCGGAGAGGCCGGGGCATTCGGCGGG 3210254 Query 66301 ACACATCAGCGACCAATCACCATCCTGTTCTACACGACGCATAAATAGATCAGGTATCCA 66360 ||||| || | ||| ||||| || || ||||| | ||| || || || | ||||| Sbjct 3210255 GCACATGAGGGTCCAGTCACCGTCAGCCTCGACACGCCTCATGAAGAGGTCCGAGATCCA 3210314 Query 66361 GAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCCGTGATTTTTGCGCAAGTC 66420 ||||||||||||||| || || || || |||||| ||||||| || ||||| | ||| Sbjct 3210315 GAGGGCGTAGAAGAGGTCACGGGCGCGAACCTCCTCCTTGCCGTGGTTCTTGCGGAGGTC 3210374 Query 66421 GAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATACG 66480 |||||| || |||| ||||| ||||| || || ||||||||||| || | || || Sbjct 3210375 GAGGAAGTCGAAGACATCGGCGTGCCAGGGCTCGAGGTAGATGGCAAAGGCACCGGGGCG 3210434 Query 66481 TTTGCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGCAACATCGGTAC 66540 ||| ||||| ||||||||||| ||||| | || | || |||| | ||| || || Sbjct 3210435 CTTGTTACCACCCTGGTCGACGTAACGAGCAGTAGCGTCGTAGGCACGGAGCATGGGGAC 3210494 Query 66541 GAGCCCGTTAGATTTGCCATTGGTGCCGTCGATGGGGGATCCTCGTGCCCGTATATCGTG 66600 || |||||||| | ||| ||||||||| | ||| || || || || || | ||| Sbjct 3210495 GATACCGTTAGAGTAGCCGTTGGTGCCGGCAATGTACGAGCCCTTGGCACGAATGTTGTG 3210554 Query 66601 AACATTCAGACCAATACCACCGGCCGTCTTCGAGA--TGGCAGCACAATCGGCCACTGTC 66658 | | ||||| ||||| ||||| ||||| |||| ||| ||| | | |||| Sbjct 3210555 GATGTGGAGACCGATACCGCCGGCAGTCTTGGAGATCTGGGCGCAGGTCTTGAGAGTGTC 3210614 Query 66659 CGGAATATGCCGTCAATGGAGTCACCCTTGATGGTCAGGAGGTAGCATGAACTAAGTTGG 66718 | | ||||||||||| ||||| |||| |||| | |||| |||| || | ||| Sbjct 3210615 --GTAGATGCCGTCAATAGAGTCGTCCTTCATGGCGACGAGGAAGCACGACGACATCTGG 3210672 Query 66719 GGTTTGGGTGTGGCGGCCGAGAAGAGGGTGGGTGTAGCGTGCGTAAAGTAATGGCGAGAC 66778 || | ||| || |||| ||||||||| || | ||||| ||||||||| | ||| Sbjct 3210673 GGGTGGGGGGTACCGGCGTTGAAGAGGGTAGGCGAGGCGTGGGTAAAGTAACGCTCCGAC 3210732 Query 66779 ATGTAATTGTACGTCTCGATGACAGCATCAATGTTTTCGCCATGAATCCCGAGTG-CACA 66837 ||| ||||| ||||| ||||| |||||||| ||||| || || |||| | ||| Sbjct 3210733 ATGAGGTTGTAGGTCTCAATGACCTTTTCAATGTTCTCGCCGTGGATACCGATCGAGACA 3210792 Query 66838 TCGCATCAGGAGGTATTGAGGCCGTT---CGACC-AGCCGATCCTTGATATGCATTAAGT 66893 ||||| | | || || || || | ||||| |||| || ||| | | | || Sbjct 3210793 -CGCATAATCATGTGCTGGGGACGCTCGGCGACCTTGCCG--CC--GATGCGGAGGAGGT 3210847 Query 66894 AGGAGCGTTCCAGGGTCTTGATACCAAAGTA 66924 | || || || |||||||||| |||||||| Sbjct 3210848 ACGAACGCTCAAGGGTCTTGAAGCCAAAGTA 3210878 >seq4 Length=4180124 Score = 141 bits (156), Expect = 7e-29 Identities = 343/515 (67%), Gaps = 7/515 (1%) Strand=Plus/Minus Query 61399 TTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAATTGG 61458 ||||| ||||| ||||| || || | ||| ||| || || ||||| || ||| Sbjct 55105 TTCAAGGCCATTGAGACCATTCCCTGCATCAAGAAGAAGGCCGACTGGGCTCTCCGCTGG 55046 Query 61459 ATCACCAGTACAACGGCTA--CATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGG 61516 ||| | | || | ||| | || | ||| || | | || ||||| | || |||| Sbjct 55045 ATCTC--GGACGAGAGCTCGTCTTTCGCTGAGCGCCTCATTGCCTTTGCTGCCGTTGAGG 54988 Query 61517 GTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGC 61576 || | || ||| |||||||| ||| | ||||| ||| | ||||| |||||||| |||| Sbjct 54987 GTATCTTCTTCTCGGGATCGTTCGCCTCGATCTTCTGGCTCAAGAAGCGTGGACTCATGC 54928 Query 61577 CCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGTGATTTTG 61636 |||| || |||||| ||| ||| | || || || |||||||| | || || |||| Sbjct 54927 CCGGACTCACCTTCTCCAACGAGCTCATCTCGCGTGACGAGGGTCTCCACACCGACTTTG 54868 Query 61637 CTGTTTTGCTATTCAAACGCTATCTGGTGAATCGTCCGTCGGAGGAGCGTGTGGGTGAGA 61696 | | | || |||| || | || | | |||||| || | | | ||| Sbjct 54867 CCTGTCTCCTCTTCACACACC-TCCGCCG--TCGTCCCCACCCCGACCTCATTGACAAGA 54811 Query 61697 TTGTTCGTGAGGCGGTAACTATCGAACAGGAATTTCTGACTGACGCTTTGCCCGTCTCAC 61756 | | ||||| || | || || ||||| || || || || ||| | ||||| || | Sbjct 54810 TCATCAAGGAGGCTGTCAAGATTGAGCAGGAGTTCCTCACCGAGGCTCTTCCCGTGTCGC 54751 Query 61757 TCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGACCGTCTGT 61816 |||| |||||||| | || |||| ||||| ||||| ||||| |||||||||||| Sbjct 54750 TCATTGGCATGAACGCTACCCTCATGTGCCAGTACATTGAGTTTGTCGCCGACCGTCTGC 54691 Query 61817 TGGTCGATTTGGGTATGAAGCGGATCTATAATACGAAAAACCCATTTGATTTCATGGACA 61876 | |||| | || | || ||| || || | | ||||| || || || ||||| | Sbjct 54690 TCGTCGCCCTCGGAAACGAGAAGATGTACAACTCTACCAACCCCTTCGACTTTATGGAGA 54631 Query 61877 TGATTTCGCTGGATGGCAAGACGAATTTTTTCGAG 61911 |||| ||||| | |||||| | || || |||||| Sbjct 54630 TGATCTCGCTCCAGGGCAAGGCCAACTTCTTCGAG 54596 >seq2 Length=4873547 Score = 87.8 bits (96), Expect = 1e-12 Identities = 183/272 (67%), Gaps = 3/272 (1%) Strand=Plus/Minus Query 61498 GCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTG 61557 || |||||| |||||||| | || || || |||||||| || || || ||| | Sbjct 436853 GCGTTTGCGTGTGTCGAGGGCATCTTCTTTTCCGGCTCGTTTGCGGCGATTTTCTGGCTC 436794 Query 61558 AAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAG 61617 ||||| || || ||||||| ||||||||||| || ||| | || || ||||||||| Sbjct 436793 AAGAAGCGCGGGCTTATGCGGGGTCTGACCTTTTCAAACGAGCTCATCTCGCGCGACGAG 436734 Query 61618 GGCATGCATTGTGATTTTGCTGTTTTGCTATTCAAACGCTATCTGGTGAATCGTCCGTCG 61677 |||||||| || ||||| ||||| | | || ||||| |||| ||| Sbjct 436733 GGCATGCACACCGACTTTGCGTGCTTGCTGT---ATGGCCATCTGCGCCATCGGTGCTCG 436677 Query 61678 GAGGAGCGTGTGGGTGAGATTGTTCGTGAGGCGGTAACTATCGAACAGGAATTTCTGACT 61737 ||||| ||| | ||| | || |||||||| || ||| |||| ||||| || Sbjct 436676 GAGGACGAGGTGCACAACATTATCCGCGAGGCGGTCGAGATTGAAAAGGAGTTTCTCACG 436617 Query 61738 GACGCTTTGCCCGTCTCACTCATCGGCATGAA 61769 || || | ||| | || |||||||| || Sbjct 436616 GATGCGCTCCCCTGTGCGCTGATCGGCATCAA 436585 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397567917628880